Plasmid NZ_CP040631.1

Sequence

Nucleotide Information

Accession NZ_CP040631.1
Description Bacteroides sp. PHL 2737 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 8331 bp
GC Content 0.41 %
Created at NCBI May 23, 2019



Assembly

Genome Data Information

Accession GCF_004115325.2
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 8875372

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 43.6532N;79.3832W
Original Query Type coordinates
Coordinates (Lat/Lon) 43.65/-79.38
Address Toronto City Hall, 100, Queen Street West, Financial District, Spadina—Fort York, Old Toronto, Toronto, Golden Horseshoe, Ontario, M5H 2N2, Canada

ECOSYSTEM
Original Query Homo sapiens,Abdominal ascites fluid
Classification abdominal,disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Ascites (SYMP:0000526 )
    • An abdominal symptom consisting of an abnormal accumulation of serous fluid in the spaces between tissues and organs in the cavity of the abdomen.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP036548.1
    • Description: Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_2, complete sequence
    • Source: refseq
    • Created at NCBI: March 4, 2019

  • Host Taxonomy
    Assigned Host: Bacteroides fragilis (817)
  • Biosample
    Accession: 2730069
  • GEOGRAPHICAL INFORMATION
    • Original Query: 56.1917N;10.1722E
    • Original Query Type: coordinates
    • Address: Aarhus University Hospital, Palle Juul-Jensens Boulevard, Brendstrup, Aarhus, Aarhus Municipality, Central Denmark Region, 8210, Denmark
    • Coordinates (Lat/Lon): 56.19/10.17
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: primary bacterial infectious disease
    • DOID/SYMP:
      • Primary bacterial infectious disease (DOID:0050338 )
        • A bacterial infectious disease that results_in infection by bacteria as a result of their presence or activity within the normal, healthy host, and their intrinsic virulence is, in part, a necessary consequence of their need to reproduce and spread.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2