Plasmid NZ_CP040398.1

Sequence

Nucleotide Information

Accession NZ_CP040398.1
Description Escherichia coli strain BA22372 plasmid pCTX-M-15_22372, complete sequence
Source refseq
Topology circular
Length 98470 bp
GC Content 0.51 %
Created at NCBI May 27, 2019



Assembly

Genome Data Information

Accession GCF_005671355.1
Assembly Coverage 116.6


Biosample

Curated Collection Information
Accession 8637771

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.91N;79.13E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.91/79.13
Address Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Blood stream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmph(A)copy
amrfinderplussul2copy
amrfinderplustet(B)copy
amrfinderplussul1copy
amrfinderplusaph(6)-Idcopy
amrfinderplusblaCTX-M-15copy
amrfinderplusaac(3)-IIdcopy
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusaadA5copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 101 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000195__NC_013728_00014IncQ12021921103minus10010001635
replicon000095__NZ_CP014273_00094IncFIB5302253998minus98.67110001733
repliconKF954760IncFII7696277252plus91.065993.49e-107394
replicon000136__AP014877_00014IncFIA9725098107plus95.45510001369
relaxaseNC_011980_00044MOBF8893690447plus98.413860983
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 5 of 5 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2