Plasmid NZ_CP040024.1

Sequence

Nucleotide Information

Accession NZ_CP040024.1
Description Klebsiella pneumoniae strain KPC160132 plasmid pIncC-L132, complete sequence
Source refseq
Topology circular
Length 155920 bp
GC Content 0.51 %
Created at NCBI March 15, 2020



Assembly

Genome Data Information

Accession GCF_011129215.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 11246291

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.3N;120.9E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.30/120.90
Address Zhongzhiguan, Taoyuan District, Kaohsiung, 848, Taiwan

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP040039.1 See Comparison
NZ_LT985224.1 See Comparison
NZ_CP065451.1 See Comparison
NZ_CP133884.1 See Comparison
NZ_MF150121.1 See Comparison
NZ_CP134037.1 See Comparison
NZ_CP134000.1 See Comparison
NZ_CP129805.1 See Comparison
NZ_CP040024.1 See Comparison
NZ_MF150123.1 See Comparison
NZ_CP040039.1 See Comparison
NZ_LT985224.1 See Comparison
NZ_CP065451.1 See Comparison
NZ_CP134037.1 See Comparison
NZ_CP134000.1 See Comparison
NZ_CP133884.1 See Comparison
NZ_MF150123.1 See Comparison
NZ_CP129805.1 See Comparison
NZ_MF150121.1 See Comparison
NZ_CP065451.1 See Comparison
NZ_LT985224.1 See Comparison
NZ_CP040039.1 See Comparison
NZ_CP129805.1 See Comparison
NZ_CP133884.1 See Comparison
NZ_CP134037.1 See Comparison
NZ_CP134000.1 See Comparison
NZ_CP065451.1 See Comparison
NZ_LT985224.1 See Comparison
NZ_MF150123.1 See Comparison
NZ_MF150121.1 See Comparison
NZ_CP040039.1 See Comparison
NZ_CP134037.1 See Comparison
NZ_CP133884.1 See Comparison
NZ_CP134000.1 See Comparison
NZ_CP129805.1 See Comparison
NZ_MF150123.1 See Comparison
NZ_MF150121.1 See Comparison
NZ_CP133884.1 See Comparison
NZ_CP040039.1 See Comparison
NZ_LT985224.1 See Comparison
NZ_CP065451.1 See Comparison
NZ_CP065451.1 See Comparison
NZ_CP129805.1 See Comparison
NZ_MF150121.1 See Comparison
NZ_CP134037.1 See Comparison
NZ_CP134000.1 See Comparison
NZ_MF150123.1 See Comparison
NZ_CP040039.1 See Comparison
NZ_LT985224.1 See Comparison
NZ_MF150123.1 See Comparison
NZ_CP134037.1 See Comparison
NZ_CP134000.1 See Comparison
NZ_CP133884.1 See Comparison
NZ_CP129805.1 See Comparison
NZ_MF150121.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore