Plasmid NZ_CP038600.1

Sequence

Nucleotide Information

Accession NZ_CP038600.1
Description Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.5, complete sequence
Source refseq
Topology circular
Length 2097 bp
GC Content 0.56 %
Created at NCBI April 13, 2019



Assembly

Genome Data Information

Accession GCF_004768645.1
Assembly Coverage 60


Biosample

Curated Collection Information
Accession 6030204

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada
Original Query Type name
Coordinates (Lat/Lon) 61.07/-107.99
Address Canada

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP060525.1 See Comparison
NZ_CP059921.1 See Comparison
CP082527.1 See Comparison
CP093108.1 See Comparison
CP093102.1 See Comparison
CP093080.1 See Comparison
NZ_CP081884.1 See Comparison
CP082678.1 See Comparison
CP082746.1 See Comparison
NZ_CP080162.1 See Comparison
NZ_CP080171.1 See Comparison
NZ_MW651980.1 See Comparison
NZ_CP012932.1 See Comparison
NZ_CP030793.1 See Comparison
NC_021927.1 See Comparison
NZ_CP140403.1 See Comparison
NZ_OY754432.1 See Comparison
NZ_CP081884.1 See Comparison
NZ_CP140407.1 See Comparison
NZ_CP140408.1 See Comparison
CP093108.1 See Comparison
CP093102.1 See Comparison
CP093080.1 See Comparison
NZ_CP060525.1 See Comparison
NZ_CP059921.1 See Comparison
CP082527.1 See Comparison
CP082678.1 See Comparison
NZ_CP060525.1 See Comparison
CP082746.1 See Comparison
NZ_CP080162.1 See Comparison
NZ_CP080171.1 See Comparison
NC_021927.1 See Comparison
NZ_CP030793.1 See Comparison
NZ_OY754432.1 See Comparison
NZ_CP140403.1 See Comparison
NZ_CP059921.1 See Comparison
NZ_MW651980.1 See Comparison
NZ_CP012932.1 See Comparison
NZ_CP140407.1 See Comparison
NZ_CP140408.1 See Comparison
NC_021927.1 See Comparison
NZ_CP081884.1 See Comparison
CP093108.1 See Comparison
CP093102.1 See Comparison
CP093080.1 See Comparison
CP082527.1 See Comparison
CP082678.1 See Comparison
CP082746.1 See Comparison
NZ_CP080162.1 See Comparison
NZ_CP080171.1 See Comparison
NZ_MW651980.1 See Comparison
NZ_CP012932.1 See Comparison
NZ_CP060525.1 See Comparison
NZ_CP140407.1 See Comparison
NZ_CP030793.1 See Comparison
NZ_OY754432.1 See Comparison
NZ_CP140403.1 See Comparison
NZ_CP140408.1 See Comparison
NZ_CP059921.1 See Comparison
CP093108.1 See Comparison
CP093102.1 See Comparison
CP093080.1 See Comparison
CP082527.1 See Comparison
CP082678.1 See Comparison
CP082746.1 See Comparison
NZ_CP080162.1 See Comparison
NZ_CP081884.1 See Comparison
NZ_CP080171.1 See Comparison
NZ_CP140407.1 See Comparison
NZ_MW651980.1 See Comparison
NC_021927.1 See Comparison
NZ_CP038600.1 See Comparison
NZ_CP140408.1 See Comparison
NZ_CP012932.1 See Comparison
NZ_CP030793.1 See Comparison
NZ_OY754432.1 See Comparison
NZ_CP140403.1 See Comparison
NZ_CP060525.1 See Comparison
NZ_CP059921.1 See Comparison
CP082678.1 See Comparison
CP093108.1 See Comparison
CP093102.1 See Comparison
CP093080.1 See Comparison
CP082746.1 See Comparison
NZ_CP080162.1 See Comparison
NZ_CP081884.1 See Comparison
CP082527.1 See Comparison
NZ_CP080171.1 See Comparison
NZ_MW651980.1 See Comparison
NC_021927.1 See Comparison
NZ_CP012932.1 See Comparison
NZ_CP140403.1 See Comparison
NZ_CP030793.1 See Comparison
NZ_OY754432.1 See Comparison
CP093108.1 See Comparison
NZ_CP140407.1 See Comparison
NZ_CP140408.1 See Comparison
NZ_CP060525.1 See Comparison
NZ_CP059921.1 See Comparison
CP093102.1 See Comparison
CP093080.1 See Comparison
NZ_CP081884.1 See Comparison
CP082527.1 See Comparison
CP082678.1 See Comparison
CP082746.1 See Comparison
NZ_CP080162.1 See Comparison
NZ_CP080171.1 See Comparison
NZ_CP012932.1 See Comparison
NZ_MW651980.1 See Comparison
NC_021927.1 See Comparison
NZ_CP030793.1 See Comparison
NZ_OY754432.1 See Comparison
NZ_CP140403.1 See Comparison
NZ_CP140407.1 See Comparison
NZ_CP140408.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore