Plasmid NZ_CP038361.1

Sequence

Nucleotide Information

Accession NZ_CP038361.1
Description Escherichia coli O157:H7 strain F7386 plasmid pF7386-2
Source refseq
Topology linear
Length 58000 bp
GC Content 0.42 %
Created at NCBI May 28, 2020



Assembly

Genome Data Information

Accession GCF_013167695.1
Assembly Coverage 220


Biosample

Curated Collection Information
Accession 5360162

PLASMID INFORMATION
BIOSAMPLE_pathotype EHEC

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP051424.1 See Comparison
NZ_CP086475.1 See Comparison
NZ_CP086485.1 See Comparison
NZ_CP029977.1 See Comparison
CP093130.1 See Comparison
CP073614.1 See Comparison
NZ_CP029977.1 See Comparison
CP057478.1 See Comparison
NZ_CP038381.1 See Comparison
NZ_CP086475.1 See Comparison
NZ_CP086485.1 See Comparison
NZ_CP086495.1 See Comparison
NZ_CP086505.1 See Comparison
NZ_CP086515.1 See Comparison
CP073614.1 See Comparison
NZ_CP086495.1 See Comparison
NZ_CP086505.1 See Comparison
NZ_CP086515.1 See Comparison
NZ_CP024858.1 See Comparison
NZ_CP038361.1 See Comparison
NZ_CP051424.1 See Comparison
CP093130.1 See Comparison
NZ_CP051424.1 See Comparison
NZ_CP038381.1 See Comparison
NZ_CP024858.1 See Comparison
CP057478.1 See Comparison
CP093130.1 See Comparison
NZ_CP086475.1 See Comparison
NZ_CP086485.1 See Comparison
NZ_CP086495.1 See Comparison
NZ_CP086505.1 See Comparison
NZ_CP086515.1 See Comparison
CP073614.1 See Comparison
NZ_CP029977.1 See Comparison
CP093130.1 See Comparison
CP057478.1 See Comparison
NZ_CP038381.1 See Comparison
NZ_CP051424.1 See Comparison
NZ_CP086475.1 See Comparison
NZ_CP086485.1 See Comparison
NZ_CP086495.1 See Comparison
NZ_CP024858.1 See Comparison
NZ_CP029977.1 See Comparison
CP073614.1 See Comparison
NZ_CP086505.1 See Comparison
NZ_CP086515.1 See Comparison
NZ_CP051424.1 See Comparison
NZ_CP024858.1 See Comparison
CP057478.1 See Comparison
NZ_CP038381.1 See Comparison
CP093130.1 See Comparison
NZ_CP086475.1 See Comparison
NZ_CP086485.1 See Comparison
NZ_CP086495.1 See Comparison
NZ_CP024858.1 See Comparison
NZ_CP086505.1 See Comparison
NZ_CP086515.1 See Comparison
CP073614.1 See Comparison
NZ_CP029977.1 See Comparison
NZ_CP038381.1 See Comparison
CP057478.1 See Comparison
NZ_CP086485.1 See Comparison
NZ_CP051424.1 See Comparison
NZ_CP086495.1 See Comparison
NZ_CP086505.1 See Comparison
NZ_CP086515.1 See Comparison
CP057478.1 See Comparison
NZ_CP086475.1 See Comparison
CP093130.1 See Comparison
CP073614.1 See Comparison
NZ_CP029977.1 See Comparison
NZ_CP024858.1 See Comparison
NZ_CP038381.1 See Comparison
CP093130.1 See Comparison
NZ_CP051424.1 See Comparison
NZ_CP086475.1 See Comparison
NZ_CP086485.1 See Comparison
NZ_CP086495.1 See Comparison
NZ_CP086505.1 See Comparison
NZ_CP086515.1 See Comparison
NZ_CP029977.1 See Comparison
CP073614.1 See Comparison
CP057478.1 See Comparison
NZ_CP024858.1 See Comparison
NZ_CP038381.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2