Plasmid NZ_CP038285.1

Sequence

Nucleotide Information

Accession NZ_CP038285.1
Description Escherichia coli O157:H7 strain YB14-1 plasmid pYB14-2, complete sequence
Source refseq
Topology circular
Length 2679 bp
GC Content 0.46 %
Created at NCBI May 28, 2020



Assembly

Genome Data Information

Accession GCF_013167155.1
Assembly Coverage 247


Biosample

Curated Collection Information
Accession 5360245

PLASMID INFORMATION
BIOSAMPLE_pathotype EHEC

GEOGRAPHICAL INFORMATION
Original Query USA,Nebraska
Original Query Type name
Coordinates (Lat/Lon) 41.74/-99.59
Address USA,Nebraska

ECOSYSTEM
Original Query cattle,cattle feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP147047.1 See Comparison
CP051836.1 See Comparison
CP051793.1 See Comparison
CP051787.1 See Comparison
CP051783.1 See Comparison
CP051779.1 See Comparison
NZ_CP116099.1 See Comparison
NZ_CP147047.1 See Comparison
NZ_CP028593.1 See Comparison
NZ_CP028604.1 See Comparison
CP051793.1 See Comparison
CP051836.1 See Comparison
CP051787.1 See Comparison
CP051783.1 See Comparison
CP051779.1 See Comparison
NZ_CP116099.1 See Comparison
NZ_CP028604.1 See Comparison
NZ_CP028593.1 See Comparison
NZ_CP116099.1 See Comparison
NZ_CP147047.1 See Comparison
CP051836.1 See Comparison
CP051793.1 See Comparison
CP051787.1 See Comparison
CP051783.1 See Comparison
CP051779.1 See Comparison
CP051793.1 See Comparison
NZ_CP028604.1 See Comparison
NZ_CP028593.1 See Comparison
NZ_CP147047.1 See Comparison
CP051836.1 See Comparison
NZ_CP038285.1 See Comparison
CP051787.1 See Comparison
CP051783.1 See Comparison
CP051779.1 See Comparison
NZ_CP116099.1 See Comparison
CP051836.1 See Comparison
NZ_CP028604.1 See Comparison
NZ_CP028593.1 See Comparison
NZ_CP147047.1 See Comparison
CP051793.1 See Comparison
CP051787.1 See Comparison
CP051783.1 See Comparison
CP051779.1 See Comparison
NZ_CP028604.1 See Comparison
NZ_CP116099.1 See Comparison
NZ_CP028593.1 See Comparison
CP051793.1 See Comparison
NZ_CP147047.1 See Comparison
CP051783.1 See Comparison
CP051779.1 See Comparison
CP051836.1 See Comparison
CP051787.1 See Comparison
NZ_CP116099.1 See Comparison
NZ_CP028604.1 See Comparison
NZ_CP028593.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore