Plasmid NZ_CP036544.1

Sequence

Nucleotide Information

Accession NZ_CP036544.1
Description Bacteroides fragilis strain DCMOUH0018B plasmid pBFO18_2, complete sequence
Source refseq
Topology circular
Length 4137 bp
GC Content 0.45 %
Created at NCBI March 4, 2019



Assembly

Genome Data Information

Accession GCF_000724665.2
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 2730071

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 55.3958N;10.3886E
Original Query Type coordinates
Coordinates (Lat/Lon) 55.40/10.39
Address Odense Rådhus, Skomagerstræde, City Campus, Odense, Odense Kommune, Region of Southern Denmark, 5000, Denmark

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query primary bacterial infectious disease
DOID/SYMP
  • Primary bacterial infectious disease (DOID:0050338 )
    • A bacterial infectious disease that results_in infection by bacteria as a result of their presence or activity within the normal, healthy host, and their intrinsic virulence is, in part, a necessary consequence of their need to reproduce and spread.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
PGAGmbpCcopy
PGAGmbpBcopy
PGAGmbpAcopy
PGAGhypothetical proteincopy
PGAGtype II toxin-antitoxin system YoeB family toxincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 8 of 8 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
No data available in table
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 0 to 0 of 0 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2