Plasmid NZ_CP035468.1

Sequence

Nucleotide Information

Accession NZ_CP035468.1
Description Escherichia coli strain U12A plasmid pU12A_A, complete sequence
Source refseq
Topology circular
Length 151747 bp
GC Content 0.52 %
Created at NCBI Feb. 15, 2019



Assembly

Genome Data Information

Accession GCF_004141955.1
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 10817475

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Utah
Original Query Type name
Coordinates (Lat/Lon) 39.42/-111.71
Address USA,Utah

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LS992169.1 See Comparison
NZ_CP035517.1 See Comparison
NZ_CP035478.1 See Comparison
NZ_CP135692.1 See Comparison
NZ_CP135647.1 See Comparison
CP125005.1 See Comparison
NZ_OZ039399.1 See Comparison
NZ_AP018456.1 See Comparison
NZ_CP063516.1 See Comparison
NZ_LS992169.1 See Comparison
AP026519.1 See Comparison
AP026477.1 See Comparison
NZ_CP135692.1 See Comparison
NZ_CP035517.1 See Comparison
NZ_CP035478.1 See Comparison
NZ_CP135647.1 See Comparison
NZ_AP018456.1 See Comparison
NZ_OZ039399.1 See Comparison
CP125005.1 See Comparison
NZ_OZ039399.1 See Comparison
NZ_CP063516.1 See Comparison
AP026519.1 See Comparison
AP026477.1 See Comparison
NZ_LS992169.1 See Comparison
NZ_CP135692.1 See Comparison
NZ_CP035517.1 See Comparison
NZ_CP035478.1 See Comparison
NZ_CP135647.1 See Comparison
CP125005.1 See Comparison
AP026519.1 See Comparison
NZ_CP063516.1 See Comparison
NZ_AP018456.1 See Comparison
AP026477.1 See Comparison
NZ_CP135692.1 See Comparison
NZ_LS992169.1 See Comparison
NZ_CP035517.1 See Comparison
NZ_CP035478.1 See Comparison
NZ_CP135647.1 See Comparison
NZ_CP063516.1 See Comparison
CP125005.1 See Comparison
NZ_OZ039399.1 See Comparison
NZ_AP018456.1 See Comparison
AP026519.1 See Comparison
AP026477.1 See Comparison
NZ_CP135692.1 See Comparison
NZ_CP035517.1 See Comparison
NZ_CP035478.1 See Comparison
NZ_LS992169.1 See Comparison
NZ_CP135647.1 See Comparison
NZ_CP063516.1 See Comparison
NZ_OZ039399.1 See Comparison
NZ_AP018456.1 See Comparison
CP125005.1 See Comparison
NZ_AP018456.1 See Comparison
AP026519.1 See Comparison
AP026477.1 See Comparison
NZ_CP035468.1 See Comparison
NZ_CP035517.1 See Comparison
NZ_CP035478.1 See Comparison
NZ_CP135692.1 See Comparison
NZ_CP135647.1 See Comparison
CP125005.1 See Comparison
NZ_OZ039399.1 See Comparison
NZ_LS992169.1 See Comparison
NZ_CP063516.1 See Comparison
AP026519.1 See Comparison
AP026477.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore