Plasmid NZ_CP034592.1

Sequence

Nucleotide Information

Accession NZ_CP034592.1
Description Escherichia coli strain L37 plasmid pL37-4, complete sequence
Source refseq
Topology circular
Length 76559 bp
GC Content 0.52 %
Created at NCBI Jan. 2, 2019



Assembly

Genome Data Information

Accession GCF_003971215.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 10606937

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 32.40N;119.40E
Original Query Type coordinates
Coordinates (Lat/Lon) 32.40/119.40
Address 2, 四望亭路, 石桥社区, Shuangqiao, Hanjiang District, Yangzhou City, Jiangsu, 225100, China

ECOSYSTEM
Original Query anus swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP034592.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-55copy
amrfinderplusfosA3copy
rgiTEM-244copy
PGAGtraDcopy
PGAGtraIcopy
PGAGtraXcopy
PGAGfertility inhibition protein FinOcopy
PGAGANR family transcriptional regulatorcopy
PGAGhypothetical proteincopy
PGAGDEAD/DEAH box helicase family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 95 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formation08-5333_00200MPF_Unknown21702plus96.8259901074
mate-pair-formationNC_022651_00077MPF_F5372054028plus100994.39e-63213
mate-pair-formationNC_010409_00124MPF_F5460655331plus98.761004.18e-156486
mate-pair-formationNC_019094_00090MPF_F5533456728plus95.923960832
mate-pair-formationNC_017639_00094MPF_F5778558297plus97.0761003.9000000000000004e-98316
mate-pair-formationNC_013437_00116MPF_T5881661437plus90.5039901640
mate-pair-formationNC_007675_00027MPF_F6182362452plus99.048972.89e-135425
mate-pair-formationNC_017639_00100MPF_F6245263408plus98.7461000605
mate-pair-formationNC_019037_00027MPF_F6439065025plus92.9251005.36e-130409
mate-pair-formationNC_019094_00068MPF_F6584167688plus96.75310001157
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2