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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP034068.1
Sequence
Nucleotide Information
Accession
NZ_CP034068.1
Description
Shigella sonnei strain FDAARGOS_524 plasmid unnamed2, complete sequence
Source
refseq
Topology
circular
Length
8401 bp
GC Content
0.55 %
Created at NCBI
April 2, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Shigella sonnei (624)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Shigella (620)
Species
Shigella_sonnei (624)
Strain
Assembly
Genome Data Information
Accession
GCF_003855115.1
Assembly Coverage
15.43
Biosample
Curated Collection Information
Accession
10163218
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
None
Original Query Type
None
Coordinates (Lat/Lon)
Address
None
ECOSYSTEM
Original Query
Homo sapiens,stool
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Age
8Y
Host-associated Sex
female
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP034070.1
NZ_CP034069.1
NZ_CP034066.1
Similar Plasmids
based on Mash distance
NZ_CP099354.1
See Comparison
NZ_CP116927.1
See Comparison
NZ_OP038303.1
See Comparison
NZ_OP038291.1
See Comparison
NZ_OP038280.1
See Comparison
NZ_OP038294.1
See Comparison
NZ_OP038299.1
See Comparison
NZ_OP038283.1
See Comparison
NZ_OP038273.1
See Comparison
NZ_OP038288.1
See Comparison
NZ_OP038296.1
See Comparison
NZ_OP038285.1
See Comparison
NZ_OP038270.1
See Comparison
NZ_OP038268.1
See Comparison
NZ_CP110405.1
See Comparison
NZ_CP110399.1
See Comparison
NZ_CP109777.1
See Comparison
NZ_CP053763.1
See Comparison
NC_009345.1
See Comparison
NZ_CP010118.1
See Comparison
NZ_CP014101.1
See Comparison
NZ_CP014100.1
See Comparison
NZ_CP010832.1
See Comparison
NC_008439.1
See Comparison
NZ_CP119009.1
See Comparison
CP037998.1
See Comparison
CP035011.1
See Comparison
NZ_CP023647.1
See Comparison
NZ_OR237802.1
See Comparison
NZ_OR237800.1
See Comparison
NZ_OR237796.1
See Comparison
NZ_CP140623.1
See Comparison
NZ_CP151351.1
See Comparison
NZ_CP151316.1
See Comparison
NZ_CP151394.1
See Comparison
NZ_CP151303.1
See Comparison
NZ_CP151366.1
See Comparison
NZ_CP151336.1
See Comparison
NZ_CP151386.1
See Comparison
NZ_CP151375.1
See Comparison
NZ_CP146296.1
See Comparison
CP057366.1
See Comparison
NZ_OP038303.1
See Comparison
NZ_CP012198.1
See Comparison
NZ_CP099354.1
See Comparison
NZ_CP049284.1
See Comparison
NZ_CP116927.1
See Comparison
NZ_OP038291.1
See Comparison
NZ_OP038280.1
See Comparison
NZ_OP038294.1
See Comparison
NZ_OP038299.1
See Comparison
NZ_OP038283.1
See Comparison
NZ_OP038273.1
See Comparison
NZ_OP038288.1
See Comparison
NZ_OP038296.1
See Comparison
NZ_OP038285.1
See Comparison
NZ_CP110399.1
See Comparison
NZ_OP038270.1
See Comparison
NZ_OP038268.1
See Comparison
NZ_CP109777.1
See Comparison
NZ_CP110405.1
See Comparison
NZ_CP053763.1
See Comparison
NZ_CP010118.1
See Comparison
NZ_CP014101.1
See Comparison
NZ_CP014100.1
See Comparison
NZ_CP010832.1
See Comparison
CP037998.1
See Comparison
NZ_CP023647.1
See Comparison
NC_009345.1
See Comparison
NC_008439.1
See Comparison
CP035011.1
See Comparison
NZ_CP119009.1
See Comparison
NZ_OR237802.1
See Comparison
NZ_OR237800.1
See Comparison
NZ_OR237796.1
See Comparison
NZ_CP140623.1
See Comparison
NZ_CP146296.1
See Comparison
NZ_CP151351.1
See Comparison
NZ_CP151316.1
See Comparison
NZ_CP151394.1
See Comparison
NZ_CP151303.1
See Comparison
NZ_CP151366.1
See Comparison
NZ_CP151336.1
See Comparison
NZ_CP151386.1
See Comparison
NZ_CP151375.1
See Comparison
NZ_CP049284.1
See Comparison
CP057366.1
See Comparison
NZ_CP110405.1
See Comparison
NZ_CP012198.1
See Comparison
NZ_CP116927.1
See Comparison
NZ_CP099354.1
See Comparison
NZ_OP038303.1
See Comparison
NZ_OP038291.1
See Comparison
NZ_OP038280.1
See Comparison
NZ_OP038294.1
See Comparison
NZ_OP038299.1
See Comparison
NZ_OP038283.1
See Comparison
NZ_OP038273.1
See Comparison
NZ_OP038288.1
See Comparison
NZ_OP038296.1
See Comparison
NZ_OP038285.1
See Comparison
NZ_OP038270.1
See Comparison
NZ_OP038268.1
See Comparison
NZ_CP110399.1
See Comparison
NZ_CP109777.1
See Comparison
NZ_CP053763.1
See Comparison
NZ_CP023647.1
See Comparison
NC_009345.1
See Comparison
NC_008439.1
See Comparison
NZ_CP010118.1
See Comparison
NZ_CP014101.1
See Comparison
NZ_CP014100.1
See Comparison
NZ_CP010832.1
See Comparison
NZ_CP119009.1
See Comparison
CP037998.1
See Comparison
CP035011.1
See Comparison
NZ_OR237802.1
See Comparison
NZ_OR237800.1
See Comparison
NZ_OR237796.1
See Comparison
NZ_CP146296.1
See Comparison
NZ_CP151351.1
See Comparison
NZ_CP151316.1
See Comparison
NZ_CP151394.1
See Comparison
NZ_CP151303.1
See Comparison
NZ_CP151366.1
See Comparison
NZ_CP151336.1
See Comparison
NZ_CP151386.1
See Comparison
NZ_CP151375.1
See Comparison
CP057366.1
See Comparison
NZ_CP140623.1
See Comparison
NZ_CP012198.1
See Comparison
NZ_CP049284.1
See Comparison
NZ_CP110405.1
See Comparison
NZ_CP099354.1
See Comparison
NZ_OP038303.1
See Comparison
NZ_OP038291.1
See Comparison
NZ_OP038280.1
See Comparison
NZ_OP038294.1
See Comparison
NZ_OP038299.1
See Comparison
NZ_OP038283.1
See Comparison
NZ_OP038273.1
See Comparison
NZ_OP038288.1
See Comparison
NZ_OP038296.1
See Comparison
NZ_OP038285.1
See Comparison
NZ_OP038270.1
See Comparison
NZ_OP038268.1
See Comparison
NZ_CP116927.1
See Comparison
NZ_CP110399.1
See Comparison
CP037998.1
See Comparison
NZ_CP109777.1
See Comparison
NZ_CP053763.1
See Comparison
NZ_CP010118.1
See Comparison
NZ_CP010832.1
See Comparison
NZ_CP023647.1
See Comparison
NZ_CP014101.1
See Comparison
NZ_CP014100.1
See Comparison
NC_009345.1
See Comparison
NC_008439.1
See Comparison
CP035011.1
See Comparison
NZ_CP119009.1
See Comparison
NZ_OR237802.1
See Comparison
NZ_OR237800.1
See Comparison
NZ_OR237796.1
See Comparison
NZ_CP049284.1
See Comparison
NZ_CP151351.1
See Comparison
NZ_CP151316.1
See Comparison
NZ_CP151394.1
See Comparison
NZ_CP151303.1
See Comparison
NZ_CP151366.1
See Comparison
NZ_CP151336.1
See Comparison
NZ_CP151386.1
See Comparison
NZ_CP151375.1
See Comparison
NZ_CP146296.1
See Comparison
NZ_CP140623.1
See Comparison
CP057366.1
See Comparison
NZ_CP012198.1
See Comparison
NZ_CP110405.1
See Comparison
NZ_CP116927.1
See Comparison
NZ_CP099354.1
See Comparison
NZ_OP038303.1
See Comparison
NZ_OP038291.1
See Comparison
NZ_OP038280.1
See Comparison
NZ_OP038294.1
See Comparison
NZ_OP038299.1
See Comparison
NZ_OP038283.1
See Comparison
NZ_OP038273.1
See Comparison
NZ_OP038288.1
See Comparison
NZ_OP038296.1
See Comparison
NZ_OP038285.1
See Comparison
NZ_OP038270.1
See Comparison
NZ_OP038268.1
See Comparison
NZ_CP110399.1
See Comparison
NC_009345.1
See Comparison
NZ_CP109777.1
See Comparison
NZ_CP010832.1
See Comparison
NC_008439.1
See Comparison
NZ_CP053763.1
See Comparison
NZ_CP010118.1
See Comparison
NZ_CP023647.1
See Comparison
NZ_CP034068.1
See Comparison
NZ_CP014101.1
See Comparison
NZ_CP014100.1
See Comparison
CP037998.1
See Comparison
CP035011.1
See Comparison
NZ_OR237802.1
See Comparison
NZ_OR237800.1
See Comparison
NZ_OR237796.1
See Comparison
NZ_CP151351.1
See Comparison
NZ_CP119009.1
See Comparison
NZ_CP151303.1
See Comparison
NZ_CP151366.1
See Comparison
NZ_CP151316.1
See Comparison
NZ_CP151336.1
See Comparison
NZ_CP151394.1
See Comparison
NZ_CP151386.1
See Comparison
NZ_CP049284.1
See Comparison
NZ_CP151375.1
See Comparison
NZ_CP140623.1
See Comparison
CP057366.1
See Comparison
NZ_CP146296.1
See Comparison
NZ_CP116927.1
See Comparison
NZ_CP012198.1
See Comparison
NZ_CP099354.1
See Comparison
NZ_CP110405.1
See Comparison
NZ_OP038296.1
See Comparison
NZ_OP038285.1
See Comparison
NZ_OP038270.1
See Comparison
NZ_OP038268.1
See Comparison
NZ_OP038303.1
See Comparison
NZ_OP038291.1
See Comparison
NZ_OP038280.1
See Comparison
NZ_OP038294.1
See Comparison
NZ_OP038299.1
See Comparison
NZ_OP038283.1
See Comparison
NZ_OP038273.1
See Comparison
NZ_OP038288.1
See Comparison
NZ_CP110399.1
See Comparison
NZ_CP010118.1
See Comparison
NZ_CP109777.1
See Comparison
NZ_CP053763.1
See Comparison
NZ_CP014101.1
See Comparison
NZ_CP010832.1
See Comparison
NZ_CP014100.1
See Comparison
CP037998.1
See Comparison
NC_009345.1
See Comparison
NC_008439.1
See Comparison
CP035011.1
See Comparison
NZ_CP023647.1
See Comparison
NZ_CP151351.1
See Comparison
NZ_CP151336.1
See Comparison
NZ_CP151386.1
See Comparison
NZ_CP151375.1
See Comparison
NZ_OR237802.1
See Comparison
NZ_OR237800.1
See Comparison
NZ_OR237796.1
See Comparison
NZ_CP119009.1
See Comparison
NZ_CP151316.1
See Comparison
NZ_CP151394.1
See Comparison
NZ_CP151303.1
See Comparison
NZ_CP151366.1
See Comparison
NZ_CP146296.1
See Comparison
NZ_CP140623.1
See Comparison
NZ_CP012198.1
See Comparison
NZ_CP049284.1
See Comparison
CP057366.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore