Plasmid NZ_CP034068.1

Sequence

Nucleotide Information

Accession NZ_CP034068.1
Description Shigella sonnei strain FDAARGOS_524 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 8401 bp
GC Content 0.55 %
Created at NCBI April 2, 2019



Assembly

Genome Data Information

Accession GCF_003855115.1
Assembly Coverage 15.43


Biosample

Curated Collection Information
Accession 10163218

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 8Y
Host-associated Sex female

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP151366.1 See Comparison
NZ_CP151336.1 See Comparison
NZ_CP151386.1 See Comparison
NZ_CP151375.1 See Comparison
NZ_CP146296.1 See Comparison
CP057366.1 See Comparison
NZ_OP038303.1 See Comparison
NZ_CP012198.1 See Comparison
NZ_CP099354.1 See Comparison
NZ_CP049284.1 See Comparison
NZ_CP116927.1 See Comparison
NZ_OP038291.1 See Comparison
NZ_OP038280.1 See Comparison
NZ_OP038294.1 See Comparison
NZ_OP038299.1 See Comparison
NZ_OP038283.1 See Comparison
NZ_OP038273.1 See Comparison
NZ_OP038288.1 See Comparison
NZ_OP038296.1 See Comparison
NZ_OP038285.1 See Comparison
NZ_CP110399.1 See Comparison
NZ_OP038270.1 See Comparison
NZ_OP038268.1 See Comparison
NZ_CP109777.1 See Comparison
NZ_CP110405.1 See Comparison
NZ_CP053763.1 See Comparison
NZ_CP010118.1 See Comparison
NZ_CP014101.1 See Comparison
NZ_CP014100.1 See Comparison
NZ_CP010832.1 See Comparison
CP037998.1 See Comparison
NZ_CP023647.1 See Comparison
NC_009345.1 See Comparison
NC_008439.1 See Comparison
CP035011.1 See Comparison
NZ_CP119009.1 See Comparison
NZ_OR237802.1 See Comparison
NZ_OR237800.1 See Comparison
NZ_OR237796.1 See Comparison
NZ_CP140623.1 See Comparison
NZ_CP146296.1 See Comparison
NZ_CP151351.1 See Comparison
NZ_CP151316.1 See Comparison
NZ_CP151394.1 See Comparison
NZ_CP151303.1 See Comparison
NZ_CP151366.1 See Comparison
NZ_CP151336.1 See Comparison
NZ_CP151386.1 See Comparison
NZ_CP151375.1 See Comparison
NZ_CP049284.1 See Comparison
CP057366.1 See Comparison
NZ_CP110405.1 See Comparison
NZ_CP012198.1 See Comparison
NZ_CP116927.1 See Comparison
NZ_CP099354.1 See Comparison
NZ_OP038303.1 See Comparison
NZ_OP038291.1 See Comparison
NZ_OP038280.1 See Comparison
NZ_OP038294.1 See Comparison
NZ_OP038299.1 See Comparison
NZ_OP038283.1 See Comparison
NZ_OP038273.1 See Comparison
NZ_OP038288.1 See Comparison
NZ_OP038296.1 See Comparison
NZ_OP038285.1 See Comparison
NZ_OP038270.1 See Comparison
NZ_OP038268.1 See Comparison
NZ_CP110399.1 See Comparison
NZ_CP109777.1 See Comparison
NZ_CP053763.1 See Comparison
NZ_CP023647.1 See Comparison
NC_009345.1 See Comparison
NC_008439.1 See Comparison
NZ_CP010118.1 See Comparison
NZ_CP014101.1 See Comparison
NZ_CP014100.1 See Comparison
NZ_CP010832.1 See Comparison
NZ_CP119009.1 See Comparison
CP037998.1 See Comparison
CP035011.1 See Comparison
NZ_OR237802.1 See Comparison
NZ_OR237800.1 See Comparison
NZ_OR237796.1 See Comparison
NZ_CP146296.1 See Comparison
NZ_CP151351.1 See Comparison
NZ_CP151316.1 See Comparison
NZ_CP151394.1 See Comparison
NZ_CP151303.1 See Comparison
NZ_CP151366.1 See Comparison
NZ_CP151336.1 See Comparison
NZ_CP151386.1 See Comparison
NZ_CP151375.1 See Comparison
CP057366.1 See Comparison
NZ_CP140623.1 See Comparison
NZ_CP012198.1 See Comparison
NZ_CP049284.1 See Comparison
NZ_CP110405.1 See Comparison
NZ_CP099354.1 See Comparison
NZ_OP038303.1 See Comparison
NZ_OP038291.1 See Comparison
NZ_OP038280.1 See Comparison
NZ_OP038294.1 See Comparison
NZ_OP038299.1 See Comparison
NZ_OP038283.1 See Comparison
NZ_OP038273.1 See Comparison
NZ_OP038288.1 See Comparison
NZ_OP038296.1 See Comparison
NZ_OP038285.1 See Comparison
NZ_OP038270.1 See Comparison
NZ_OP038268.1 See Comparison
NZ_CP116927.1 See Comparison
NZ_CP110399.1 See Comparison
CP037998.1 See Comparison
NZ_CP109777.1 See Comparison
NZ_CP053763.1 See Comparison
NZ_CP010118.1 See Comparison
NZ_CP010832.1 See Comparison
NZ_CP023647.1 See Comparison
NZ_CP014101.1 See Comparison
NZ_CP014100.1 See Comparison
NC_009345.1 See Comparison
NC_008439.1 See Comparison
CP035011.1 See Comparison
NZ_CP119009.1 See Comparison
NZ_OR237802.1 See Comparison
NZ_OR237800.1 See Comparison
NZ_OR237796.1 See Comparison
NZ_CP049284.1 See Comparison
NZ_CP151351.1 See Comparison
NZ_CP151316.1 See Comparison
NZ_CP151394.1 See Comparison
NZ_CP151303.1 See Comparison
NZ_CP151366.1 See Comparison
NZ_CP151336.1 See Comparison
NZ_CP151386.1 See Comparison
NZ_CP151375.1 See Comparison
NZ_CP146296.1 See Comparison
NZ_CP140623.1 See Comparison
CP057366.1 See Comparison
NZ_CP012198.1 See Comparison
NZ_CP110405.1 See Comparison
NZ_CP116927.1 See Comparison
NZ_CP099354.1 See Comparison
NZ_OP038303.1 See Comparison
NZ_OP038291.1 See Comparison
NZ_OP038280.1 See Comparison
NZ_OP038294.1 See Comparison
NZ_OP038299.1 See Comparison
NZ_OP038283.1 See Comparison
NZ_OP038273.1 See Comparison
NZ_OP038288.1 See Comparison
NZ_OP038296.1 See Comparison
NZ_OP038285.1 See Comparison
NZ_OP038270.1 See Comparison
NZ_OP038268.1 See Comparison
NZ_CP110399.1 See Comparison
NC_009345.1 See Comparison
NZ_CP109777.1 See Comparison
NZ_CP010832.1 See Comparison
NC_008439.1 See Comparison
NZ_CP053763.1 See Comparison
NZ_CP010118.1 See Comparison
NZ_CP023647.1 See Comparison
NZ_CP034068.1 See Comparison
NZ_CP014101.1 See Comparison
NZ_CP014100.1 See Comparison
CP037998.1 See Comparison
CP035011.1 See Comparison
NZ_OR237802.1 See Comparison
NZ_OR237800.1 See Comparison
NZ_OR237796.1 See Comparison
NZ_CP151351.1 See Comparison
NZ_CP119009.1 See Comparison
NZ_CP151303.1 See Comparison
NZ_CP151366.1 See Comparison
NZ_CP151316.1 See Comparison
NZ_CP151336.1 See Comparison
NZ_CP151394.1 See Comparison
NZ_CP151386.1 See Comparison
NZ_CP049284.1 See Comparison
NZ_CP151375.1 See Comparison
NZ_CP140623.1 See Comparison
CP057366.1 See Comparison
NZ_CP146296.1 See Comparison
NZ_CP116927.1 See Comparison
NZ_CP012198.1 See Comparison
NZ_CP099354.1 See Comparison
NZ_CP110405.1 See Comparison
NZ_OP038296.1 See Comparison
NZ_OP038285.1 See Comparison
NZ_OP038270.1 See Comparison
NZ_OP038268.1 See Comparison
NZ_OP038303.1 See Comparison
NZ_OP038291.1 See Comparison
NZ_OP038280.1 See Comparison
NZ_OP038294.1 See Comparison
NZ_OP038299.1 See Comparison
NZ_OP038283.1 See Comparison
NZ_OP038273.1 See Comparison
NZ_OP038288.1 See Comparison
NZ_CP110399.1 See Comparison
NZ_CP010118.1 See Comparison
NZ_CP109777.1 See Comparison
NZ_CP053763.1 See Comparison
NZ_CP014101.1 See Comparison
NZ_CP010832.1 See Comparison
NZ_CP014100.1 See Comparison
CP037998.1 See Comparison
NC_009345.1 See Comparison
NC_008439.1 See Comparison
CP035011.1 See Comparison
NZ_CP023647.1 See Comparison
NZ_CP151351.1 See Comparison
NZ_CP151336.1 See Comparison
NZ_CP151386.1 See Comparison
NZ_CP151375.1 See Comparison
NZ_OR237802.1 See Comparison
NZ_OR237800.1 See Comparison
NZ_OR237796.1 See Comparison
NZ_CP119009.1 See Comparison
NZ_CP151316.1 See Comparison
NZ_CP151394.1 See Comparison
NZ_CP151303.1 See Comparison
NZ_CP151366.1 See Comparison
NZ_CP146296.1 See Comparison
NZ_CP140623.1 See Comparison
NZ_CP012198.1 See Comparison
NZ_CP049284.1 See Comparison
CP057366.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore