Plasmid NZ_CP033983.1

Sequence

Nucleotide Information

Accession NZ_CP033983.1
Description Staphylococcus aureus strain P2D1C1 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 1491 bp
GC Content 0.33 %
Created at NCBI Dec. 14, 2019



Assembly

Genome Data Information

Accession GCF_009739695.1
Assembly Coverage 594


Biosample

Curated Collection Information
Accession 10374694

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.7732N;35.1853E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.77/35.19
Address Shaarei Tsedek, Herzl, Yefe Nof, Kfar Shaul, Jerusalem, Jerusalem Subdistrict, Jerusalem District, 9546105, Israel

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query ENDOCARDITIS
DOID/SYMP
  • Endocarditis (DOID:10314 )
    • A endocardium disease characterized by inflammation of the endocardium of the heart chambers and valves.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity



Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2