Plasmid NZ_CP032003.1

Sequence

Nucleotide Information

Accession NZ_CP032003.1
Description Acinetobacter haemolyticus strain 11616 plasmid pAhaem11616f, complete sequence
Source refseq
Topology circular
Length 86699 bp
GC Content 0.38 %
Created at NCBI Jan. 19, 2020



Assembly

Genome Data Information

Accession GCF_009892385.1
Assembly Coverage 483


Biosample

Curated Collection Information
Accession 9927968

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Mexico,Mexico City
Original Query Type name
Coordinates (Lat/Lon) 19.43/-99.13
Address Mexico,Mexico City

ECOSYSTEM
Original Query Homo sapiens,Blood culture
Classification blood,cell_culture,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex female

DISEASE
Original Query Acinetobacter infection
DOID/SYMP
  • Acinetobacter infectious disease (DOID:3091 )
    • An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
    • Has_material_basis_in: ['acinetobacter']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP032003.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2