Plasmid NZ_CP031804.1

Sequence

Nucleotide Information

Accession NZ_CP031804.1
Description Klebsiella pneumoniae strain MSB1_8A isolate MSB1_8A plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 70656 bp
GC Content 0.51 %
Created at NCBI Sept. 2, 2018



Assembly

Genome Data Information

Accession GCF_003432165.1
Assembly Coverage 119


Biosample

Curated Collection Information
Accession 4106454

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

LT174531.1 See Comparison
NZ_CP063517.1 See Comparison
NZ_LR890301.1 See Comparison
NZ_LR890430.1 See Comparison
NZ_LR890504.1 See Comparison
NZ_LR890706.1 See Comparison
NZ_LR890258.1 See Comparison
NZ_LR890328.1 See Comparison
CP110605.1 See Comparison
CP110596.1 See Comparison
CP110728.1 See Comparison
NZ_CP055077.1 See Comparison
NZ_LR890258.1 See Comparison
NZ_CP063517.1 See Comparison
NZ_LR890301.1 See Comparison
NZ_LR890430.1 See Comparison
NZ_LR890504.1 See Comparison
NZ_LR890706.1 See Comparison
LT174531.1 See Comparison
NZ_LR890328.1 See Comparison
CP110605.1 See Comparison
CP110596.1 See Comparison
CP110728.1 See Comparison
NZ_CP063517.1 See Comparison
NZ_CP055077.1 See Comparison
LT174531.1 See Comparison
NZ_LR890301.1 See Comparison
NZ_LR890430.1 See Comparison
NZ_LR890504.1 See Comparison
NZ_LR890706.1 See Comparison
NZ_LR890258.1 See Comparison
NZ_LR890328.1 See Comparison
NZ_CP055077.1 See Comparison
CP110605.1 See Comparison
CP110596.1 See Comparison
CP110728.1 See Comparison
NZ_LR890301.1 See Comparison
NZ_LR890328.1 See Comparison
LT174531.1 See Comparison
NZ_CP063517.1 See Comparison
NZ_LR890430.1 See Comparison
NZ_LR890504.1 See Comparison
NZ_LR890706.1 See Comparison
NZ_LR890258.1 See Comparison
CP110605.1 See Comparison
CP110596.1 See Comparison
CP110728.1 See Comparison
LT174531.1 See Comparison
NZ_CP055077.1 See Comparison
NZ_LR890301.1 See Comparison
NZ_LR890430.1 See Comparison
NZ_LR890504.1 See Comparison
NZ_LR890706.1 See Comparison
NZ_LR890258.1 See Comparison
NZ_CP031804.1 See Comparison
NZ_LR890301.1 See Comparison
NZ_LR890430.1 See Comparison
NZ_LR890504.1 See Comparison
NZ_LR890706.1 See Comparison
NZ_LR890258.1 See Comparison
NZ_LR890328.1 See Comparison
NZ_CP063517.1 See Comparison
NZ_LR890328.1 See Comparison
CP110605.1 See Comparison
CP110596.1 See Comparison
CP110728.1 See Comparison
NZ_CP055077.1 See Comparison
LT174531.1 See Comparison
NZ_CP063517.1 See Comparison
CP110605.1 See Comparison
CP110596.1 See Comparison
CP110728.1 See Comparison
NZ_CP055077.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore