Plasmid NZ_CP030729.1

Sequence

Nucleotide Information

Accession NZ_CP030729.1
Description Klebsiella pneumoniae strain B3 plasmid pKpnB3_4, complete sequence
Source refseq
Topology circular
Length 4119 bp
GC Content 0.41 %
Created at NCBI Aug. 10, 2022



Assembly

Genome Data Information

Accession GCF_024585205.1
Assembly Coverage 129


Biosample

Curated Collection Information
Accession 9519601

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 57.6823N;11.9613E
Original Query Type coordinates
Coordinates (Lat/Lon) 57.68/11.96
Address Sahlgrenska University Hospital, Per Dubbsgatan, Medicinareberget, Änggården, Centrum, Gothenburg, Göteborgs Stad, Västra Götaland County, 413 46, Sweden

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Pneumonia; Cerebral Hemorrhage
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.
  • Cerebrovascular disease (DOID:6713 )
    • An vascular disease that is characterized by dysfunction of the blood vessels supplying the brain.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGATP-binding proteincopy
PGAGRop family plasmid primer RNA-binding proteincopy
PGAGhelix-turn-helix domain-containing proteincopy
PGAGDUF3226 domain-containing proteincopy
MOB-typerColRNAI_rep_cluster_1987copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 5 of 5 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP024554_00008ColRNAI_rep_cluster_198712151624minus94.39991.26e-177628
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2