Plasmid NZ_CP030312.1

Sequence

Nucleotide Information

Accession NZ_CP030312.1
Description Klebsiella pneumoniae strain 11454 plasmid p11454-1, complete sequence
Source refseq
Topology circular
Length 211169 bp
GC Content 0.51 %
Created at NCBI May 22, 2021



Assembly

Genome Data Information

Accession GCF_009931075.1
Assembly Coverage 95


Biosample

Curated Collection Information
Accession 9499696

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 39.90N;116.40E
Original Query Type coordinates
Coordinates (Lat/Lon) 39.90/116.40
Address China Post, Zhengyi Avenue, Donghuamen, 首都功能核心区, Dongcheng District, Beijing, 100010, China

ECOSYSTEM
Original Query Homo sapiens,Physical
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 66
Host-associated Sex female

DISEASE
Original Query Liver Abscess
DOID/SYMP
  • Hepatic abscess (SYMP:0000295 )
    • hepatic abscess is a liver symptom characterized by a pus-filled mass in the liver that can develop from injury to the liver or an intraabdominal infection disseminated from the portal circulation.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP034776.1 See Comparison
NZ_CP026587.1 See Comparison
CP128662.1 See Comparison
NZ_CP155704.1 See Comparison
NZ_CP152339.1 See Comparison
NZ_LR745043.1 See Comparison
NZ_MN200128.1 See Comparison
CP046897.1 See Comparison
NZ_CP026587.1 See Comparison
NZ_CP034776.1 See Comparison
NZ_CP155704.1 See Comparison
CP128662.1 See Comparison
NZ_CP152339.1 See Comparison
NZ_MN200128.1 See Comparison
NZ_LR745043.1 See Comparison
CP046897.1 See Comparison
NZ_CP034776.1 See Comparison
NZ_CP034776.1 See Comparison
NZ_CP026587.1 See Comparison
NZ_CP155704.1 See Comparison
NZ_CP152339.1 See Comparison
CP046897.1 See Comparison
CP128662.1 See Comparison
NZ_LR745043.1 See Comparison
NZ_MN200128.1 See Comparison
CP128662.1 See Comparison
NZ_CP026587.1 See Comparison
CP046897.1 See Comparison
NZ_LR745043.1 See Comparison
NZ_MN200128.1 See Comparison
NZ_CP155704.1 See Comparison
NZ_CP152339.1 See Comparison
NZ_CP034776.1 See Comparison
NZ_CP030312.1 See Comparison
NZ_CP026587.1 See Comparison
CP128662.1 See Comparison
NZ_CP152339.1 See Comparison
NZ_CP155704.1 See Comparison
CP046897.1 See Comparison
NZ_LR745043.1 See Comparison
NZ_MN200128.1 See Comparison
NZ_CP034776.1 See Comparison
NZ_LR745043.1 See Comparison
NZ_CP026587.1 See Comparison
CP128662.1 See Comparison
NZ_CP152339.1 See Comparison
NZ_CP155704.1 See Comparison
CP046897.1 See Comparison
NZ_MN200128.1 See Comparison
NZ_CP026587.1 See Comparison
NZ_CP034776.1 See Comparison
CP128662.1 See Comparison
NZ_CP152339.1 See Comparison
NZ_CP155704.1 See Comparison
CP046897.1 See Comparison
NZ_LR745043.1 See Comparison
NZ_MN200128.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2