Plasmid NZ_CP030298.1

Sequence

Nucleotide Information

Accession NZ_CP030298.1
Description Klebsiella pneumoniae strain 309074 plasmid p309074-2, complete sequence
Source refseq
Topology circular
Length 70438 bp
GC Content 0.52 %
Created at NCBI May 22, 2021



Assembly

Genome Data Information

Accession GCF_009930995.1
Assembly Coverage 160


Biosample

Curated Collection Information
Accession 9499702

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36.62N;114.48E
Original Query Type coordinates
Coordinates (Lat/Lon) 36.62/114.48
Address Congtaixi Subdistrict, Congtai District, Handan, Hebei, 056100, China

ECOSYSTEM
Original Query Homo sapiens,Physical
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 47
Host-associated Sex female

DISEASE
Original Query Respiratory System Infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Respiratory system disease (DOID:1579 )
    • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore