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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP030295.1
Sequence
Nucleotide Information
Accession
NZ_CP030295.1
Description
Klebsiella pneumoniae strain 721005 plasmid p721005-3, complete sequence
Source
refseq
Topology
circular
Length
58585 bp
GC Content
0.52 %
Created at NCBI
May 22, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_009930975.1
Assembly Coverage
151
Biosample
Curated Collection Information
Accession
9499703
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
29.88N;121.55E
Original Query Type
coordinates
Coordinates (Lat/Lon)
29.88/121.55
Address
Gulou, Haishu District, Ningbo, Zhejiang, 315000, China
ECOSYSTEM
Original Query
Homo sapiens,Physical
Classification
host_associated
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Age
60
Host-associated Sex
male
DISEASE
Original Query
Urinary system infection
DOID/SYMP
Urinary tract infection
(
DOID:0080784
)
An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
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Plasmids from same Biosample
NZ_CP030294.1
NZ_CP030293.1
Similar Plasmids
based on Mash distance
NZ_CP141067.1
See Comparison
NZ_CP141067.1
See Comparison
NZ_CP141067.1
See Comparison
NZ_CP141067.1
See Comparison
NZ_CP141067.1
See Comparison
NZ_CP141067.1
See Comparison
NZ_CP030295.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore