Plasmid NZ_CP029247.1

Sequence

Nucleotide Information

Accession NZ_CP029247.1
Description Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 plasmid pOSUEC_F, complete sequence
Source refseq
Topology circular
Length 108404 bp
GC Content 0.51 %
Created at NCBI Aug. 16, 2018



Assembly

Genome Data Information

Accession GCF_003382725.1
Assembly Coverage 29.4


Biosample

Curated Collection Information
Accession 9071586

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.0142N;83.0309W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.01/-83.03
Address Buckeye Lot, Fred Taylor Drive, Columbus, Sharon, Franklin County, Ohio, 43210, United States

ECOSYSTEM
Original Query canine
Classification host_associated
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP024909.1
    • Description: Enterobacter hormaechei subsp. xiangfangensis strain OSUKPC4_L plasmid pOSUEC_L, complete sequence
    • Source: refseq
    • Created at NCBI: Sept. 22, 2018

  • Host Taxonomy
    Assigned Host: Enterobacter hormaechei (1296536)
  • Biosample
    Accession: 7988874
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.0142N;83.0309W
    • Original Query Type: coordinates
    • Address: Buckeye Lot, Fred Taylor Drive, Columbus, Sharon, Franklin County, Ohio, 43210, United States
    • Coordinates (Lat/Lon): 40.01/-83.03
  • ECOSYSTEM
    • Original Query: Canis lupus familiaris,Dermis,Bite Wound
    • Classification: host_associated,skin,wound
    • Host-associated Taxon:
      • Canis lupus (9615)
  • DISEASE
    • Original Query: cellulitis,Recovery,Acute,Healthy
    • DOID/SYMP:
      • Cellulitis (DOID:3488 )
        • A skin disease where there is a diffuse infection of connective tissue with severe inflammation of dermal and subcutaneous layers of the skin. Cellulitis can be caused by normal skin flora or by exogenous bacteria, and often occurs where the skin has previously been broken: cracks in the skin, cuts, blisters, burns, insect bites, surgical wounds, or sites of intravenous catheter insertion.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2