Plasmid NZ_CP029170.1

Sequence

Nucleotide Information

Accession NZ_CP029170.1
Description Staphylococcus aureus strain PTDrAP2 plasmid pPTDrAP2c, complete sequence
Source refseq
Topology circular
Length 3050 bp
GC Content 0.28 %
Created at NCBI May 12, 2018



Assembly

Genome Data Information

Accession GCF_003111745.1
Assembly Coverage 588.9


Biosample

Curated Collection Information
Accession 8999457

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 35S;147E
Original Query Type coordinates
Coordinates (Lat/Lon) -35.00/147.00
Address Ganmurra, Currawarna, Wagga Wagga City Council, New South Wales, 2650, Australia

ECOSYSTEM
Original Query Sus scrofa domesticus,Pig nares
Classification host_associated,nasal,respiratory_system
Host-associated Taxon

DISEASE
Original Query Exudative epidermitis
DOID/SYMP
  • Skin disease (DOID:37 )
    • An integumentary system disease that is located_in skin.
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP029170.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2