Plasmid NZ_CP028431.1

Sequence

Nucleotide Information

Accession NZ_CP028431.1
Description Escherichia coli strain RM9131 plasmid pRM9131-2, complete sequence
Source refseq
Topology circular
Length 76698 bp
GC Content 0.50 %
Created at NCBI July 13, 2018



Assembly

Genome Data Information

Accession GCF_003288295.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 8822959

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 36.6N;121.6W
Original Query Type coordinates
Coordinates (Lat/Lon) 36.60/-121.60
Address Buena Vista Road, Monterey County, California, 93962, United States

ECOSYSTEM
Original Query Bos taurus,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_013366.1 See Comparison
NZ_AP019763.1 See Comparison
NZ_AP018805.1 See Comparison
NZ_AP018800.1 See Comparison
NZ_CP028431.1 See Comparison
NZ_CP028434.1 See Comparison
NZ_CP029691.1 See Comparison
NZ_CP028118.1 See Comparison
NZ_CP027576.1 See Comparison
NZ_AP018805.1 See Comparison
NZ_AP019763.1 See Comparison
NC_013366.1 See Comparison
NZ_AP018800.1 See Comparison
NZ_AP019763.1 See Comparison
NZ_AP019763.1 See Comparison
NZ_AP018805.1 See Comparison
NZ_AP018800.1 See Comparison
NZ_CP028118.1 See Comparison
NZ_CP028434.1 See Comparison
NZ_CP029691.1 See Comparison
NZ_CP028118.1 See Comparison
NZ_CP027576.1 See Comparison
NC_013366.1 See Comparison
NZ_CP028434.1 See Comparison
NZ_CP029691.1 See Comparison
NZ_CP027576.1 See Comparison
NC_013366.1 See Comparison
NC_013366.1 See Comparison
NZ_AP018805.1 See Comparison
NZ_AP018800.1 See Comparison
NZ_CP028434.1 See Comparison
NZ_CP029691.1 See Comparison
NZ_CP028118.1 See Comparison
NZ_CP027576.1 See Comparison
NZ_AP018805.1 See Comparison
NZ_AP019763.1 See Comparison
NZ_AP018800.1 See Comparison
NZ_CP028118.1 See Comparison
NZ_CP028434.1 See Comparison
NZ_CP029691.1 See Comparison
NC_013366.1 See Comparison
NZ_CP027576.1 See Comparison
NZ_AP019763.1 See Comparison
NZ_AP019763.1 See Comparison
NZ_AP018805.1 See Comparison
NZ_AP018800.1 See Comparison
NZ_CP028434.1 See Comparison
NZ_CP029691.1 See Comparison
NZ_CP028118.1 See Comparison
NZ_CP027576.1 See Comparison
NC_013366.1 See Comparison
NZ_CP028434.1 See Comparison
NZ_CP029691.1 See Comparison
NZ_CP028118.1 See Comparison
NZ_CP027576.1 See Comparison
NZ_AP018805.1 See Comparison
NZ_AP018800.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusehxAcopy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGHTH domain-containing proteincopy
PGAGIS91 family transposasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGautotransporter outer membrane beta-barrel domain-containing proteincopy
PGAGIS3 family transposasecopy
PGAGplasmid partitioning/stability family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 78 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP003037MOBF2881629105plus1001005.38e-150536
replicon000136__AP014877_00014IncFIA13870plus97.90210001485
repliconAJ851089IncFII7645376698minus96.748943.0199999999999997e-112411
relaxaseNC_017627_00068MOBF4343948706plus97.9510003359
mate-pair-formationNC_022651_00077MPF_F3133731645plus98.058991.5299999999999998e-61208
mate-pair-formationNC_010409_00124MPF_F3222332948plus98.761004.18e-156486
mate-pair-formationNC_019094_00090MPF_F3295134345plus95.708960812
mate-pair-formationNC_009837_00049MPF_F3548836822plus98.876820890
mate-pair-formationNC_010719_00096MPF_F3810939779plus92.461000992
mate-pair-formation08-5333_00200MPF_Unknown4128643436plus97.15410001469
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2