Plasmid NZ_CP026185.1

Sequence

Nucleotide Information

Accession	NZ_CP026185.1
Description	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-9a0d, complete sequence
Source	refseq
Topology	circular
Length	40784 bp
GC Content	0.50 %
Created at NCBI	Jan. 31, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_002903025.1
Assembly Coverage	250

Biosample

Curated Collection Information

Accession	6040388

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	38.984652N;77.094709W
Original Query Type	coordinates
Coordinates (Lat/Lon)	38.98/-77.09
Address	Bethesda Metro Center Bus Station, Downtown Bethesda, Bethesda, Montgomery County, Maryland, 22814, United States

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP026185.1	See Comparison

Plasmid Visualization

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Blues

Purples

Reds

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Greens

100

Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	silC		copy
amrfinderplus	silE		copy
amrfinderplus	silR		copy
amrfinderplus	silF		copy
amrfinderplus	silB		copy
amrfinderplus	silS		copy
PGAG	RepB family plasmid replication initiator protein		copy
PGAG	Y-family DNA polymerase		copy
PGAG	umuD		copy
PGAG	parM		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 50 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000759__NC_013950_00034	rep_cluster_1418	141	1016	minus	100	100	0	1618
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 1 of 1 entry

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2