Plasmid NZ_CP026166.1

Sequence

Nucleotide Information

Accession NZ_CP026166.1
Description Klebsiella pneumoniae strain F81 plasmid pF81_2, complete sequence
Source refseq
Topology circular
Length 211437 bp
GC Content 0.50 %
Created at NCBI Feb. 1, 2019



Assembly

Genome Data Information

Accession GCF_004120155.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 8380935

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 26.093926N;119.313185E
Original Query Type coordinates
Coordinates (Lat/Lon) 26.09/119.31
Address Yuefeng, Jin'an District, Fuzhou City, Fujian, 350000, China

ECOSYSTEM
Original Query Homo sapiens,incision secretion
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 55
Host-associated Sex female

DISEASE
Original Query skin and soft tissue infection
DOID/SYMP
  • Skin disease (DOID:37 )
    • An integumentary system disease that is located_in skin.
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP066174.1 See Comparison
NZ_CP101794.1 See Comparison
MZ821666.1 See Comparison
CP144215.1 See Comparison
NZ_CP088987.1 See Comparison
NZ_CP031258.1 See Comparison
NZ_CP132650.1 See Comparison
NZ_CP076111.1 See Comparison
CP128686.1 See Comparison
NZ_CP152335.1 See Comparison
NZ_MK715436.1 See Comparison
NZ_CP144322.1 See Comparison
NZ_CP144283.1 See Comparison
NZ_CP054064.1 See Comparison
NZ_CP101794.1 See Comparison
NZ_CP066174.1 See Comparison
MZ821666.1 See Comparison
CP144215.1 See Comparison
NZ_CP088987.1 See Comparison
NZ_CP031258.1 See Comparison
CP128686.1 See Comparison
NZ_CP132650.1 See Comparison
NZ_CP076111.1 See Comparison
NZ_CP152335.1 See Comparison
NZ_MK715436.1 See Comparison
NZ_CP144322.1 See Comparison
NZ_CP144283.1 See Comparison
NZ_CP066174.1 See Comparison
NZ_CP054064.1 See Comparison
NZ_CP101794.1 See Comparison
NZ_CP088987.1 See Comparison
MZ821666.1 See Comparison
NZ_CP132650.1 See Comparison
NZ_CP031258.1 See Comparison
NZ_CP076111.1 See Comparison
NZ_MK715436.1 See Comparison
CP128686.1 See Comparison
NZ_CP152335.1 See Comparison
NZ_CP144322.1 See Comparison
NZ_CP144283.1 See Comparison
CP144215.1 See Comparison
NZ_CP054064.1 See Comparison
NZ_CP066174.1 See Comparison
NZ_CP101794.1 See Comparison
NZ_MK715436.1 See Comparison
CP128686.1 See Comparison
NZ_CP152335.1 See Comparison
NZ_CP054064.1 See Comparison
MZ821666.1 See Comparison
NZ_CP088987.1 See Comparison
NZ_CP031258.1 See Comparison
NZ_CP132650.1 See Comparison
NZ_CP076111.1 See Comparison
NZ_CP144322.1 See Comparison
NZ_CP144283.1 See Comparison
CP144215.1 See Comparison
NZ_CP101794.1 See Comparison
NZ_CP066174.1 See Comparison
NZ_CP088987.1 See Comparison
MZ821666.1 See Comparison
NZ_CP076111.1 See Comparison
NZ_CP132650.1 See Comparison
NZ_CP031258.1 See Comparison
NZ_CP152335.1 See Comparison
CP128686.1 See Comparison
NZ_CP054064.1 See Comparison
NZ_CP144322.1 See Comparison
NZ_CP144283.1 See Comparison
CP144215.1 See Comparison
NZ_MK715436.1 See Comparison
NZ_CP132650.1 See Comparison
NZ_CP101794.1 See Comparison
NZ_CP026166.1 See Comparison
NZ_CP066174.1 See Comparison
MZ821666.1 See Comparison
NZ_CP088987.1 See Comparison
NZ_CP031258.1 See Comparison
NZ_CP076111.1 See Comparison
CP128686.1 See Comparison
NZ_CP152335.1 See Comparison
NZ_CP101794.1 See Comparison
NZ_CP144322.1 See Comparison
NZ_CP144283.1 See Comparison
CP144215.1 See Comparison
NZ_CP054064.1 See Comparison
NZ_MK715436.1 See Comparison
NZ_CP066174.1 See Comparison
MZ821666.1 See Comparison
NZ_CP031258.1 See Comparison
NZ_CP088987.1 See Comparison
NZ_CP132650.1 See Comparison
NZ_CP076111.1 See Comparison
NZ_CP144322.1 See Comparison
CP144215.1 See Comparison
CP128686.1 See Comparison
NZ_CP152335.1 See Comparison
NZ_CP144283.1 See Comparison
NZ_MK715436.1 See Comparison
NZ_CP054064.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2