Plasmid NZ_CP025468.1

Sequence

Nucleotide Information

Accession NZ_CP025468.1
Description Klebsiella pneumoniae strain JS187 plasmid p187-2, complete sequence
Source refseq
Topology circular
Length 129684 bp
GC Content 0.53 %
Created at NCBI Jan. 11, 2018



Assembly

Genome Data Information

Accession GCF_002848565.1
Assembly Coverage 208


Biosample

Curated Collection Information
Accession 8180799

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Shanghai
Original Query Type name
Coordinates (Lat/Lon) 31.23/121.49
Address China,Shanghai

ECOSYSTEM
Original Query Homo sapiens,mixed culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP025468.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmerTcopy
amrfinderplusmerCcopy
amrfinderplusblaKPC-2copy
PGAGGNAT family N-acetyltransferasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGN-6 DNA methylasecopy
PGAGrepAcopy
PGAGreplication regulatory protein RepAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 149 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP017721_00179rep_cluster_218385089335minus82.169960710
replicon000128__CP023916IncFII93709603plus1001005.72e-119433
replicon000204__CP008701_00115IncR99230100125minus98.54910001581
replicon000210__KF623109_00045IncU124627125187minus10010001037
mate-pair-formationNC_021502_00150MPF_T4064142950minus99.6110001455
mate-pair-formationNC_014312_00141MPF_F4556948388minus10010001882
mate-pair-formationNC_019165_00034MPF_F4839149746minus95.796990803
mate-pair-formationNC_021654_00016MPF_F5264054601minus98.3189801234
mate-pair-formationNC_019389_00080MPF_F5465455289minus97.6421001.83e-136428
mate-pair-formationNC_022609_00081MPF_F5530556291minus91.8181000614
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 18 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2