Plasmid NZ_CP025338.2

Sequence

Nucleotide Information

Accession NZ_CP025338.2
Description Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 plasmid p11k, complete sequence
Source refseq
Topology circular
Length 11080 bp
GC Content 0.62 %
Created at NCBI Feb. 6, 2018



Assembly

Genome Data Information

Accession GCF_002762135.3
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 7945789

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.29N;120.27E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.29/120.27
Address 140之31號, Taibei Village, Taizigong, Tainan, 730, Taiwan

ECOSYSTEM
Original Query Sus scrofa domesticus,sick pig
Classification disease,host_associated
Host-associated Taxon

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP082735.1 See Comparison
NZ_CP081859.1 See Comparison
CP004059.1 See Comparison
NZ_CP044201.1 See Comparison
NZ_CP133420.1 See Comparison
NZ_CP065065.1 See Comparison
NZ_CP149326.1 See Comparison
NZ_CP149329.1 See Comparison
NZ_CP149417.1 See Comparison
NZ_KU852461.1 See Comparison
NZ_CP044201.1 See Comparison
NZ_CP100692.1 See Comparison
CP082735.1 See Comparison
CP004059.1 See Comparison
CP061254.1 See Comparison
NZ_CP081859.1 See Comparison
NZ_CP065065.1 See Comparison
NZ_CP149326.1 See Comparison
NZ_CP133420.1 See Comparison
NZ_CP149329.1 See Comparison
NZ_CP149417.1 See Comparison
CP004059.1 See Comparison
NZ_CP100692.1 See Comparison
CP061254.1 See Comparison
CP082735.1 See Comparison
NZ_KU852461.1 See Comparison
NZ_CP081859.1 See Comparison
NZ_CP044201.1 See Comparison
NZ_CP149326.1 See Comparison
NZ_CP133420.1 See Comparison
NZ_CP065065.1 See Comparison
NZ_CP149329.1 See Comparison
NZ_KU852461.1 See Comparison
NZ_CP149417.1 See Comparison
NZ_CP100692.1 See Comparison
CP082735.1 See Comparison
CP061254.1 See Comparison
CP061254.1 See Comparison
NZ_CP081859.1 See Comparison
CP004059.1 See Comparison
NZ_CP044201.1 See Comparison
NZ_CP025338.2 See Comparison
NZ_CP133420.1 See Comparison
NZ_CP065065.1 See Comparison
NZ_CP149326.1 See Comparison
NZ_CP149329.1 See Comparison
NZ_CP149417.1 See Comparison
NZ_KU852461.1 See Comparison
NZ_CP100692.1 See Comparison
CP082735.1 See Comparison
NZ_CP149326.1 See Comparison
CP004059.1 See Comparison
NZ_CP044201.1 See Comparison
NZ_CP081859.1 See Comparison
NZ_CP133420.1 See Comparison
NZ_CP065065.1 See Comparison
NZ_CP149329.1 See Comparison
NZ_CP149417.1 See Comparison
NZ_CP100692.1 See Comparison
NZ_KU852461.1 See Comparison
NZ_CP081859.1 See Comparison
CP061254.1 See Comparison
CP082735.1 See Comparison
NZ_CP044201.1 See Comparison
CP004059.1 See Comparison
NZ_CP149417.1 See Comparison
NZ_CP133420.1 See Comparison
NZ_CP065065.1 See Comparison
NZ_CP149326.1 See Comparison
NZ_CP149329.1 See Comparison
CP061254.1 See Comparison
NZ_KU852461.1 See Comparison
NZ_CP100692.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore