Plasmid NZ_CP024839.1
Sequence
Nucleotide Information
| Accession | NZ_CP024839.1 |
|---|---|
| Description | Klebsiella pneumoniae strain CRKP-1215 plasmid pCRKP-1215_1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 130922 bp |
| GC Content | 0.53 % |
| Created at NCBI | Nov. 22, 2017 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 7944237 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | South Korea,Seoul |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 37.57/126.98 |
| Address | South Korea,Seoul |
ECOSYSTEM
| Original Query | Homo sapiens,Bronchial washing |
|---|---|
| Classification | bronchi,host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qnrB1 | copy | ||
| amrfinderplus | arr-2 | copy | ||
| amrfinderplus | aac(6')-Ib | copy | ||
| amrfinderplus | catA2 | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | dfrA12 | copy | ||
| amrfinderplus | catB | copy | ||
| rgi | aadA2 | copy | ||
| rgi | catII from Escherichia coli K-12 | copy | ||
| rgi | rmtF | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 151 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000759__NC_013950_00034 | rep_cluster_1418 | 72245 | 73120 | minus | 99.886 | 100 | 0 | 1613 |
| relaxase | NC_021198_00256 | MOBP | 89972 | 91897 | plus | 100 | 100 | 0 | 1294 |
| mate-pair-formation | NC_021198_00249 | MPF_I | 95286 | 97475 | minus | 100 | 100 | 0 | 1449 |
| mate-pair-formation | NC_021198_00243 | MPF_I | 103555 | 104748 | minus | 100 | 100 | 0 | 776 |
| mate-pair-formation | NC_021198_00240 | MPF_I | 108438 | 108824 | minus | 100 | 97 | 3.23e-70 | 234 |
| mate-pair-formation | NC_021198_00239 | MPF_I | 108881 | 109411 | minus | 100 | 100 | 9.72e-83 | 272 |
| mate-pair-formation | NC_021198_00238 | MPF_I | 109424 | 110140 | minus | 100 | 100 | 4.38e-145 | 454 |
| mate-pair-formation | NC_021198_00236 | MPF_I | 111493 | 112593 | minus | 100 | 100 | 0 | 655 |
| mate-pair-formation | NC_021198_00235 | MPF_I | 112607 | 113308 | minus | 100 | 100 | 6.93e-156 | 485 |
| mate-pair-formation | NC_021198_00234 | MPF_I | 113347 | 113697 | minus | 100 | 100 | 5.190000000000004e-72 | 239 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |