Plasmid NZ_CP024817.1

Sequence

Nucleotide Information

Accession NZ_CP024817.1
Description Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence
Source refseq
Topology circular
Length 96990 bp
GC Content 0.48 %
Created at NCBI Nov. 22, 2017



Assembly

Genome Data Information

Accession GCF_002787545.1
Assembly Coverage 405


Biosample

Curated Collection Information
Accession 7944243

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea,Jeonnam
Original Query Type name
Coordinates (Lat/Lon) 35.31/126.98
Address South Korea,Jeonnam

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP023233.2 See Comparison
NZ_AP023222.2 See Comparison
NZ_CP011063.1 See Comparison
NZ_CP029117.1 See Comparison
NZ_CP019075.1 See Comparison
NZ_CP024832.1 See Comparison
NZ_CP024817.1 See Comparison
NZ_AP023436.1 See Comparison
NZ_MF679145.1 See Comparison
NZ_CP073964.1 See Comparison
NZ_AP023233.2 See Comparison
NZ_AP023233.2 See Comparison
NZ_AP023222.2 See Comparison
NZ_CP011063.1 See Comparison
NZ_CP029117.1 See Comparison
NZ_AP023436.1 See Comparison
NZ_CP019075.1 See Comparison
NZ_CP024832.1 See Comparison
NZ_MF679145.1 See Comparison
NZ_CP073964.1 See Comparison
NZ_AP023222.2 See Comparison
NZ_CP011063.1 See Comparison
NZ_CP024832.1 See Comparison
NZ_CP029117.1 See Comparison
NZ_MF679145.1 See Comparison
NZ_CP019075.1 See Comparison
NZ_CP029117.1 See Comparison
NZ_CP073964.1 See Comparison
NZ_AP023233.2 See Comparison
NZ_AP023222.2 See Comparison
NZ_CP011063.1 See Comparison
NZ_AP023436.1 See Comparison
NZ_CP073964.1 See Comparison
NZ_CP019075.1 See Comparison
NZ_CP024832.1 See Comparison
NZ_MF679145.1 See Comparison
NZ_CP019075.1 See Comparison
NZ_AP023436.1 See Comparison
NZ_CP029117.1 See Comparison
NZ_AP023233.2 See Comparison
NZ_AP023222.2 See Comparison
NZ_CP011063.1 See Comparison
NZ_CP024832.1 See Comparison
NZ_AP023233.2 See Comparison
NZ_MF679145.1 See Comparison
NZ_CP073964.1 See Comparison
NZ_AP023436.1 See Comparison
NZ_AP023222.2 See Comparison
NZ_CP011063.1 See Comparison
NZ_CP029117.1 See Comparison
NZ_CP024832.1 See Comparison
NZ_CP019075.1 See Comparison
NZ_CP073964.1 See Comparison
NZ_AP023436.1 See Comparison
NZ_MF679145.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore