Plasmid NZ_CP024571.1
Sequence
Nucleotide Information
| Accession | NZ_CP024571.1 |
|---|---|
| Description | Klebsiella pneumoniae strain INF274 isolate INF274 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 187611 bp |
| GC Content | 0.53 % |
| Created at NCBI | Nov. 8, 2017 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 4042726 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Australia |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | -24.78/134.76 |
| Address | Australia |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | diseased |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP024564.1
- Description: Klebsiella pneumoniae strain INF278 isolate INF278 plasmid unnamed1, complete sequence
- Source: refseq
- Created at NCBI: Nov. 8, 2017
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 4042728 - GEOGRAPHICAL INFORMATION
- Original Query: Australia
- Original Query Type: name
- Address: Australia
- Coordinates (Lat/Lon): -24.78/134.76
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: diseased
- DOID/SYMP:
- Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
Plasmid Visualization
Grays
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G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | dfrA12 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| rgi | aadA2 | copy | ||
| amrfinderplus | merR | copy | ||
| amrfinderplus | merP | copy | ||
| amrfinderplus | merB | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 236 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | JQ319772 | MOBH | 186398 | 186795 | plus | 100 | 100 | 0 | 736 |
| replicon | 000092__CP025470 | IncC | 1 | 1101 | plus | 100 | 100 | 0 | 2034 |
| relaxase | NC_012885_00072 | MOBH | 49933 | 52506 | plus | 88.023 | 100 | 0 | 1388 |
| relaxase | NC_012690_00071 | MOBH | 60772 | 61413 | plus | 98.131 | 100 | 2.25e-136 | 440 |
| mate-pair-formation | NC_008612_00190 | MPF_T | 26010 | 26891 | plus | 100 | 100 | 1.21e-176 | 547 |
| mate-pair-formation | NC_009140_00071 | MPF_F | 54214 | 56076 | plus | 99.839 | 100 | 0 | 1176 |
| mate-pair-formation | NC_014170_00023 | MPF_F | 60499 | 61413 | plus | 92.131 | 100 | 0 | 569 |
| mate-pair-formation | NC_012885_00083 | MPF_F | 61413 | 62726 | plus | 90.411 | 100 | 0 | 752 |
| mate-pair-formation | NC_016974_00085 | MPF_F | 62726 | 63301 | plus | 99.479 | 100 | 5.6e-115 | 365 |
| mate-pair-formation | NC_012885_00088 | MPF_T | 71510 | 73954 | plus | 98.037 | 100 | 0 | 1638 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 13 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |