Plasmid NZ_CP024523.1

Sequence

Nucleotide Information

Accession NZ_CP024523.1
Description Klebsiella pneumoniae strain INF158 isolate INF158 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 147932 bp
GC Content 0.52 %
Created at NCBI Nov. 9, 2017



Assembly

Genome Data Information

Accession GCF_002753055.1
Assembly Coverage 125


Biosample

Curated Collection Information
Accession 4106292

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,cerebrospinal fluid
Classification host_associated,nervous_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR890549.1 See Comparison
NZ_LR890549.1 See Comparison
NZ_CP024558.1 See Comparison
NZ_CP024537.1 See Comparison
NZ_CP024530.1 See Comparison
NZ_CP024551.1 See Comparison
NZ_CP024572.1 See Comparison
NZ_CP024565.1 See Comparison
NZ_CP024193.1 See Comparison
NZ_CP024558.1 See Comparison
NZ_CP024537.1 See Comparison
NZ_CP024530.1 See Comparison
NZ_CP024551.1 See Comparison
NZ_CP024572.1 See Comparison
NZ_CP024565.1 See Comparison
NZ_CP024193.1 See Comparison
NZ_CP024558.1 See Comparison
NZ_LR890549.1 See Comparison
NZ_CP024537.1 See Comparison
NZ_CP024530.1 See Comparison
NZ_CP024551.1 See Comparison
NZ_CP024572.1 See Comparison
NZ_CP024565.1 See Comparison
NZ_CP024193.1 See Comparison
NZ_LR890549.1 See Comparison
NZ_CP024537.1 See Comparison
NZ_CP024530.1 See Comparison
NZ_CP024551.1 See Comparison
NZ_CP024558.1 See Comparison
NZ_CP024572.1 See Comparison
NZ_CP024565.1 See Comparison
NZ_CP024193.1 See Comparison
NZ_LR890549.1 See Comparison
NZ_CP024558.1 See Comparison
NZ_CP024537.1 See Comparison
NZ_CP024530.1 See Comparison
NZ_CP024523.1 See Comparison
NZ_CP024551.1 See Comparison
NZ_CP024572.1 See Comparison
NZ_CP024565.1 See Comparison
NZ_CP024193.1 See Comparison
NZ_CP024558.1 See Comparison
NZ_LR890549.1 See Comparison
NZ_CP024537.1 See Comparison
NZ_CP024530.1 See Comparison
NZ_CP024551.1 See Comparison
NZ_CP024572.1 See Comparison
NZ_CP024565.1 See Comparison
NZ_CP024193.1 See Comparison
NZ_LR890549.1 See Comparison
NZ_CP024558.1 See Comparison
NZ_CP024537.1 See Comparison
NZ_CP024530.1 See Comparison
NZ_CP024551.1 See Comparison
NZ_CP024572.1 See Comparison
NZ_CP024565.1 See Comparison
NZ_CP024193.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussilFcopy
amrfinderplussilRcopy
amrfinderplussilBcopy
amrfinderplussilAcopy
amrfinderplussilCcopy
amrfinderplussilScopy
amrfinderplusarsCcopy
amrfinderplusarsBcopy
amrfinderplusarsRcopy
amrfinderplusarsAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 168 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T9135093656minus97.79210001432
replicon000107__CP014778_00094IncFIB11011plus90.30710001325
repliconCP017721_00179rep_cluster_21837787978706minus81.928960699
replicon000132__HG969996IncFII7874178975plus99.5741007.44e-118429
relaxaseNC_021231_00058MOBF8608991347minus98.17510003370
relaxaseCP035180_00077MOBF9135992111minus97.61980402
mate-pair-formationNC_019155_00032MPF_F9547698319minus99.8959901853
mate-pair-formationNC_019165_00034MPF_F9832299689minus99.7811000842
mate-pair-formationNC_021654_00016MPF_F102489104492minus10010001292
mate-pair-formationNC_019389_00080MPF_F104492105127minus96.6981003.2499999999999997e-135424
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2