Plasmid NZ_CP024433.1

Sequence

Nucleotide Information

Accession NZ_CP024433.1
Description Klebsiella pneumoniae strain DA48896 plasmid p48896_4, complete sequence
Source refseq
Topology circular
Length 55118 bp
GC Content 0.53 %
Created at NCBI March 20, 2018



Assembly

Genome Data Information

Accession GCF_003006175.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 5908511

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.53522956N;68.5546895E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.54/68.55
Address Mawand Tehsil, Kohlu District, Balochistan, Pakistan

ECOSYSTEM
Original Query Homo sapiens,Trachaeal secretion
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Trachaeal secretion
DOID/SYMP
  • Tracheitis (DOID:9392 )
    • A tracheal disease which involves bacterial infection of the trachea often caused by Staphylococcus aureus and streptococci that follows a recent viral upper respiratory infection. The symptoms include barking croup cough, loud squeaking noise while breathing, scratchy feeling in the throat, high fever, and production of large amounts of pus-filled secretions.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore