Plasmid NZ_CP024194.1
Sequence
Nucleotide Information
| Accession | NZ_CP024194.1 |
|---|---|
| Description | Klebsiella pneumoniae isolate KSB1_5D plasmid unnamed3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 89345 bp |
| GC Content | 0.51 % |
| Created at NCBI | Nov. 5, 2017 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 6112197 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 37.8457S;144.9821E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | -37.85/144.98 |
| Address | Alfred Hospital, 55, Commercial Road, Melbourne, City of Melbourne, Victoria, 3004, Australia |
ECOSYSTEM
| Original Query | Homo sapiens,rectal swab |
|---|---|
| Classification | gastrointestinal_system,host_associated,rectal |
| Host-associated Taxon |
|
DISEASE
| Original Query | carriage |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | aph(6)-Id | copy | ||
| amrfinderplus | blaCTX-M-15 | copy | ||
| amrfinderplus | aac(3)-IIe | copy | ||
| amrfinderplus | aac(6')-Ib-cr5 | copy | ||
| amrfinderplus | aph(3'')-Ib | copy | ||
| amrfinderplus | qnrB1 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | blaOXA-1 | copy | ||
| rgi | catB3 | copy | ||
| rgi | AAC(6')-Ib-cr6 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 90 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NZ_CP016035 | MOBF | 74835 | 75093 | plus | 81.439 | 96 | 1.58e-50 | 206 |
| replicon | 000759__NC_013950_00034 | rep_cluster_1418 | 19 | 894 | plus | 100 | 100 | 0 | 1618 |
| replicon | AF250878 | IncFIA | 72765 | 73151 | minus | 98.45 | 99 | 0 | 682 |
| replicon | 000207__CP025517 | IncR | 76143 | 77009 | plus | 100 | 100 | 0 | 1602 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |