Plasmid NZ_CP023857.1

Sequence

Nucleotide Information

Accession NZ_CP023857.1
Description Escherichia coli strain 2/0 plasmid p2_0.4, complete sequence
Source refseq
Topology circular
Length 2101 bp
GC Content 0.47 %
Created at NCBI Dec. 5, 2018



Assembly

Genome Data Information

Accession GCF_003856635.1
Assembly Coverage 17


Biosample

Curated Collection Information
Accession 7760925

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Sweden
Original Query Type name
Coordinates (Lat/Lon) 59.67/14.52
Address Sweden

ECOSYSTEM
Original Query Homo sapiens,Bacterial isolate,UTI
Classification cell_culture,disease,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP060945.1 See Comparison
NZ_CP083080.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_CP023857.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_AP027984.1 See Comparison
CP056408.1 See Comparison
CP125032.1 See Comparison
NZ_CP058665.1 See Comparison
CP054324.1 See Comparison
NZ_CP058665.1 See Comparison
NZ_CP060945.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_AP027984.1 See Comparison
CP125032.1 See Comparison
NZ_CP083080.1 See Comparison
CP054324.1 See Comparison
CP056408.1 See Comparison
CP056408.1 See Comparison
NZ_CP060945.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_AP027984.1 See Comparison
CP125032.1 See Comparison
NZ_CP083080.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_CP058665.1 See Comparison
NZ_CP083080.1 See Comparison
CP054324.1 See Comparison
NZ_CP060945.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_CP058665.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_AP027984.1 See Comparison
CP125032.1 See Comparison
CP056408.1 See Comparison
CP054324.1 See Comparison
NZ_CP060945.1 See Comparison
NZ_CP083080.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_AP027977.1 See Comparison
NZ_AP027984.1 See Comparison
CP125032.1 See Comparison
CP056408.1 See Comparison
NZ_CP058665.1 See Comparison
NZ_AP027977.1 See Comparison
CP054324.1 See Comparison
NZ_CP083080.1 See Comparison
NZ_CP076347.1 See Comparison
NZ_CP060945.1 See Comparison
NZ_AP027984.1 See Comparison
CP125032.1 See Comparison
CP056408.1 See Comparison
NZ_CP058665.1 See Comparison
CP054324.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore