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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP023846.1
Sequence
Nucleotide Information
Accession
NZ_CP023846.1
Description
Escherichia coli strain 4/1-1 plasmid p4_1_1.2, complete sequence
Source
refseq
Topology
circular
Length
33067 bp
GC Content
0.41 %
Created at NCBI
Dec. 5, 2018
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_003856695.1
Assembly Coverage
10
Biosample
Curated Collection Information
Accession
7760931
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Sweden
Original Query Type
name
Coordinates (Lat/Lon)
59.67/14.52
Address
Sweden
ECOSYSTEM
Original Query
Homo sapiens,Bacterial isolate,feces
Classification
cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP023848.1
NZ_CP023847.1
NZ_CP023845.1
Similar Plasmids
based on Mash distance
NC_010657.1
See Comparison
CP134901.1
See Comparison
NZ_CP023829.1
See Comparison
NZ_CP023836.1
See Comparison
CP134901.1
See Comparison
NZ_CP082060.1
See Comparison
NC_010657.1
See Comparison
NZ_CP023846.1
See Comparison
NZ_CP023829.1
See Comparison
NZ_CP023836.1
See Comparison
NZ_CP082060.1
See Comparison
NZ_CP023829.1
See Comparison
NC_010657.1
See Comparison
NZ_CP023836.1
See Comparison
NC_010657.1
See Comparison
CP134901.1
See Comparison
NZ_CP082060.1
See Comparison
NZ_CP023829.1
See Comparison
NZ_CP023836.1
See Comparison
NC_010657.1
See Comparison
CP134901.1
See Comparison
NZ_CP082060.1
See Comparison
NZ_CP023829.1
See Comparison
NZ_CP023836.1
See Comparison
NZ_CP082060.1
See Comparison
CP134901.1
See Comparison
NZ_CP082060.1
See Comparison
CP134901.1
See Comparison
NC_010657.1
See Comparison
NZ_CP023829.1
See Comparison
NZ_CP023836.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore