Plasmid NZ_CP023827.1

Sequence

Nucleotide Information

Accession NZ_CP023827.1
Description Escherichia coli strain 4/4 plasmid p4_4.1, complete sequence
Source refseq
Topology circular
Length 125877 bp
GC Content 0.52 %
Created at NCBI Dec. 5, 2018



Assembly

Genome Data Information

Accession GCF_003856655.1
Assembly Coverage 24


Biosample

Curated Collection Information
Accession 7760938

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Sweden
Original Query Type name
Coordinates (Lat/Lon) 59.67/14.52
Address Sweden

ECOSYSTEM
Original Query Homo sapiens,Bacterial isolate,feces
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP023827.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaph(6)-Idcopy
amrfinderplusblaCTX-M-27copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusaadA5copy
amrfinderplusdfrA17copy
rgidfrA17copy
rgimphAcopy
amrfinderplussenBcopy
rgiMrxcopy
amrfinderplusqacEdelta1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 153 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconAJ851089IncFII1261plus1001006.309999999999996e-134483
repliconAF250878IncFIA4034040725minus88.402991.27e-127462
replicon000096__NC_019117_00097IncFIB5524656223plus98.87510001746
repliconCP030770_00142rep_cluster_21317853279079minus92.0631000780
repliconMK878891_00042IncFIA125023125850minus99.2759701496
mate-pair-formationNC_019094_00068MPF_F34445291minus91.88310001113
relaxaseNC_021819_00066MOBP6867469012minus88.496982.75e-58208
mate-pair-formationNC_008460_00097MPF_F52915926minus98.5851001.3899999999999995e-126400
mate-pair-formationNC_017639_00100MPF_F63067262minus98.433920603
mate-pair-formationNC_007675_00027MPF_F72627891minus98.095971.35e-134423
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2