Plasmid NZ_CP023781.1

Sequence

Nucleotide Information

Accession NZ_CP023781.1
Description Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.1, complete sequence
Source refseq
Topology circular
Length 199876 bp
GC Content 0.35 %
Created at NCBI Jan. 10, 2018



Assembly

Genome Data Information

Accession GCF_002848625.1
Assembly Coverage 26


Biosample

Curated Collection Information
Accession 7679728

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.789990N;73.953689W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address The Mount Sinai Hospital, 1, Park Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10129, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP023785.1
    • Description: Enterococcus faecium strain Efaecium_ER04120.3A plasmid pER04120.3A.1, complete sequence
    • Source: refseq
    • Created at NCBI: Jan. 11, 2018

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 7679729
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.789990N;73.953689W
    • Original Query Type: coordinates
    • Address: The Mount Sinai Hospital, 1, Park Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10129, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore