Plasmid NZ_CP023572.1

Sequence

Nucleotide Information

Accession NZ_CP023572.1
Description Enterobacter hormaechei strain BW plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 5523 bp
GC Content 0.51 %
Created at NCBI Jan. 29, 2020



Assembly

Genome Data Information

Accession GCF_009930835.1
Assembly Coverage 150


Biosample

Curated Collection Information
Accession 7692716

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 42.2845477N;83.7296668W
Original Query Type coordinates
Coordinates (Lat/Lon) 42.28/-83.73
Address University of Michigan Medical Center, East Medical Center Drive, Ann Arbor, Washtenaw County, Michigan, 48109, United States

ECOSYSTEM
Original Query Homo sapiens,Blood and wound
Classification blood,circulatory_system,host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Enterobacter bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore