Plasmid NZ_CP021546.1
Sequence
Nucleotide Information
| Accession | NZ_CP021546.1 |
|---|---|
| Description | Klebsiella pneumoniae strain AR_0112 plasmid tig00000002, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 74660 bp |
| GC Content | 0.45 % |
| Created at NCBI | June 10, 2017 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 4014953 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaKPC-3 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| PGAG | ATP-binding protein | copy | ||
| PGAG | type IV secretory system conjugative DNA transfer family protein | copy | ||
| PGAG | virB11 | copy | ||
| PGAG | TrbI/VirB10 family protein | copy | ||
| PGAG | TrbG/VirB9 family P-type conjugative transfer protein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | VirB4 family type IV secretion system protein | copy | ||
| PGAG | VirB3 family type IV secretion system protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 89 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | KC845573 | IncI2 | 35182 | 36198 | plus | 100 | 100 | 0 | 1879 |
| relaxase | NC_022520_00030 | MOBP | 51388 | 55626 | plus | 100 | 100 | 0 | 2805 |
| mate-pair-formation | NC_019039_00051 | MPF_T | 3278 | 4045 | minus | 99.219 | 100 | 1.21e-171 | 531 |
| mate-pair-formation | NC_019039_00052 | MPF_T | 4045 | 4776 | minus | 99.59 | 100 | 4.56e-147 | 460 |
| mate-pair-formation | NC_020270_00063 | MPF_T | 4943 | 7297 | minus | 100 | 100 | 0 | 1569 |
| mate-pair-formation | NC_019115_00018 | MPF_T | 13806 | 14789 | minus | 98.78 | 100 | 0 | 581 |
| mate-pair-formation | NC_020270_00058 | MPF_T | 73761 | 74660 | minus | 100 | 100 | 1.22e-169 | 544 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 7 of 7 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |