Plasmid NZ_CP020924.1

Sequence

Nucleotide Information

Accession NZ_CP020924.1
Description Salmonella enterica subsp. enterica strain 16A242 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 65419 bp
GC Content 0.40 %
Created at NCBI June 5, 2017



Assembly

Genome Data Information

Accession GCF_002163995.1
Assembly Coverage 211


Biosample

Curated Collection Information
Accession 6646159

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 35.51N;127.07E
Original Query Type coordinates
Coordinates (Lat/Lon) 35.51/127.07
Address 구림로, Geumchang-ri, Gurim-myeon, Sunchang-gun, Jeonbuk State, 56012, South Korea

ECOSYSTEM
Original Query Jeonju-si
Classification location
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP020924.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGtyrosine-type recombinase/integrasecopy
PGAGdqlBcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGSprT-like domain-containing proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 83 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseCP024283_00034MOBP8771602plus91.736980451
relaxaseNC_011351_00034MOBP4006443195plus98.4679802050
replicon000223__CP022729_00007IncX42924530249minus10010001857
mate-pair-formationNC_011351_00017MPF_T1632918233minus99.2139701217
mate-pair-formationNC_011351_00014MPF_T2049821274minus99.2281001.05e-172534
mate-pair-formationNC_011351_00013MPF_T2127422008minus1001004.910000000000001e-129409
mate-pair-formationNC_011351_00011MPF_T2214224511minus99.49410001575
mate-pair-formationNC_011351_00017MPF_T5609757242minus99.738970721
mate-pair-formationNC_011351_00017MPF_T5730858003minus97.414970452
mate-pair-formationNC_011351_00011MPF_T6189663926minus89.26510001160
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2