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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP020491.1
Sequence
Nucleotide Information
Accession
NZ_CP020491.1
Description
Enterococcus faecium strain CFSAN059071 plasmid unnamed3, complete sequence
Source
refseq
Topology
circular
Length
1979 bp
GC Content
0.39 %
Created at NCBI
April 28, 2018
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterococcus faecium (1352)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Lactobacillales (186826)
Family
Enterococcaceae (81852)
Genus
Enterococcus (1350)
Species
Enterococcus_faecium (1352)
Strain
Assembly
Genome Data Information
Accession
GCF_003071445.1
Assembly Coverage
460
Biosample
Curated Collection Information
Accession
6621457
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Denmark
Original Query Type
name
Coordinates (Lat/Lon)
56.21/9.30
Address
Denmark
ECOSYSTEM
Original Query
Homo sapiens,human,urine
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
bacteriuria
DOID/SYMP
Bacteriuria
(
DOID:1412
)
A urinary system disease which consists of the presence of bacteria in urine.
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP020490.1
NZ_CP020489.1
Similar Plasmids
based on Mash distance
NZ_CP085905.1
See Comparison
CP063646.1
See Comparison
NZ_CP020487.1
See Comparison
NZ_CP085905.1
See Comparison
NZ_CP085917.1
See Comparison
CP063646.1
See Comparison
NZ_CP085917.1
See Comparison
NZ_CP020487.1
See Comparison
NZ_CP020487.1
See Comparison
CP063646.1
See Comparison
NZ_CP085905.1
See Comparison
NZ_CP085917.1
See Comparison
CP063646.1
See Comparison
NZ_CP085905.1
See Comparison
NZ_CP085917.1
See Comparison
NZ_CP020487.1
See Comparison
NZ_CP020491.1
See Comparison
CP063646.1
See Comparison
CP063646.1
See Comparison
NZ_CP020487.1
See Comparison
NZ_CP085905.1
See Comparison
NZ_CP085917.1
See Comparison
NZ_CP020487.1
See Comparison
NZ_CP085905.1
See Comparison
NZ_CP085917.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore