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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP018829.1
Sequence
Nucleotide Information
Accession
NZ_CP018829.1
Description
Enterococcus faecium strain ISMMS_VRE_12 plasmid p3_ISMMS_VRE12, complete sequence
Source
refseq
Topology
circular
Length
13141 bp
GC Content
0.31 %
Created at NCBI
Jan. 19, 2017
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterococcus faecium (1352)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Lactobacillales (186826)
Family
Enterococcaceae (81852)
Genus
Enterococcus (1350)
Species
Enterococcus_faecium (1352)
Strain
Assembly
Genome Data Information
Accession
GCF_001953235.1
Assembly Coverage
None
Biosample
Curated Collection Information
Accession
3988631
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
40.7127N;74.0059W
Original Query Type
coordinates
Coordinates (Lat/Lon)
40.71/-74.01
Address
New York City Hall, 260, Broadway, Lower Manhattan, Manhattan Community Board 1, Manhattan, New York County, New York, 10000, United States
ECOSYSTEM
Original Query
Homo sapiens,blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Enterococcus bacteremia
DOID/SYMP
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
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Plasmids from same Biosample
NZ_CP018827.1
NZ_CP018826.1
NZ_CP018825.1
Similar Plasmids
based on Mash distance
NZ_CP018834.1
See Comparison
NZ_CP018829.1
See Comparison
NZ_CP018834.1
See Comparison
NZ_CP018834.1
See Comparison
NZ_CP018834.1
See Comparison
NZ_CP018834.1
See Comparison
NZ_CP018834.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP018834.1
Sequence
Accession
:
NZ_CP018834.1
Description
: Enterococcus faecium strain ISMMS_VRE_9 plasmid p3_ISMMS_VRE9, complete sequence
Source
: refseq
Created at NCBI
: Jan. 19, 2017
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
3988627
GEOGRAPHICAL INFORMATION
Original Query
: 40.7127N;74.0059W
Original Query Type
: coordinates
Address
: New York City Hall, 260, Broadway, Lower Manhattan, Manhattan Community Board 1, Manhattan, New York County, New York, 10000, United States
Coordinates
(Lat/Lon): 40.71/-74.01
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Enterococcus bacteremia
DOID/SYMP
:
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore