Plasmid NZ_CP018432.1

Sequence

Nucleotide Information

Accession NZ_CP018432.1
Description Klebsiella pneumoniae strain MNCRE78 plasmid pMNCRE78_3, complete sequence
Source refseq
Topology circular
Length 52059 bp
GC Content 0.48 %
Created at NCBI Dec. 19, 2016



Assembly

Genome Data Information

Accession GCF_001902195.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 6067846

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.7296N;94.6859W
Original Query Type coordinates
Coordinates (Lat/Lon) 46.73/-94.69
Address 20th Street Southwest, Cass County, Minnesota, United States

ECOSYSTEM
Original Query Homo sapiens,wound
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OQ821207.1 See Comparison
NZ_CP104693.1 See Comparison
NZ_CP018436.1 See Comparison
NZ_CP018426.1 See Comparison
NZ_CP036448.1 See Comparison
NZ_CP036440.1 See Comparison
NZ_CP036437.1 See Comparison
NZ_CP027143.1 See Comparison
NZ_OQ821207.1 See Comparison
NZ_OQ821042.1 See Comparison
NZ_CP104693.1 See Comparison
NZ_CP018426.1 See Comparison
NZ_CP018436.1 See Comparison
NZ_CP036448.1 See Comparison
NZ_CP036440.1 See Comparison
NZ_CP036437.1 See Comparison
NZ_CP027143.1 See Comparison
NZ_OQ821042.1 See Comparison
NZ_CP104693.1 See Comparison
NZ_CP018432.1 See Comparison
NZ_CP018436.1 See Comparison
NZ_CP018426.1 See Comparison
NZ_CP104693.1 See Comparison
NZ_CP036448.1 See Comparison
NZ_CP036440.1 See Comparison
NZ_CP036437.1 See Comparison
NZ_CP027143.1 See Comparison
NZ_OQ821207.1 See Comparison
NZ_OQ821042.1 See Comparison
NZ_CP036448.1 See Comparison
NZ_CP018436.1 See Comparison
NZ_CP018426.1 See Comparison
NZ_CP036440.1 See Comparison
NZ_CP036437.1 See Comparison
NZ_CP027143.1 See Comparison
NZ_CP018436.1 See Comparison
NZ_OQ821207.1 See Comparison
NZ_OQ821042.1 See Comparison
NZ_CP104693.1 See Comparison
NZ_CP018426.1 See Comparison
NZ_CP036448.1 See Comparison
NZ_CP036448.1 See Comparison
NZ_CP027143.1 See Comparison
NZ_CP104693.1 See Comparison
NZ_CP018436.1 See Comparison
NZ_CP018426.1 See Comparison
NZ_CP036440.1 See Comparison
NZ_CP036437.1 See Comparison
NZ_CP036440.1 See Comparison
NZ_CP036437.1 See Comparison
NZ_OQ821207.1 See Comparison
NZ_OQ821042.1 See Comparison
NZ_CP027143.1 See Comparison
NZ_OQ821207.1 See Comparison
NZ_OQ821042.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore