Plasmid NZ_CP017845.1

Sequence

Nucleotide Information

Accession NZ_CP017845.1
Description Escherichia coli strain FMU073332 plasmid pEcoFMU073332a, complete sequence
Source refseq
Topology circular
Length 5538 bp
GC Content 0.49 %
Created at NCBI Dec. 17, 2016



Assembly

Genome Data Information

Accession GCF_001888075.1
Assembly Coverage 290


Biosample

Curated Collection Information
Accession 5945146

PLASMID INFORMATION
Genotype st+, lt+, lngA+, cstH+, ecpA+, etpA+, etpB+, tibA-, leoA-, tia-, eatA-, cfAI, cfAIII-, cs1-.
BIOSAMPLE_pathotype ETEC

GEOGRAPHICAL INFORMATION
Original Query 18.688857N;99.119482W
Original Query Type coordinates
Coordinates (Lat/Lon) 18.69/-99.12
Address Calle 5 de Mayo, Tlaltizapan, Tlaltizapán de Zapata, Morelos, Mexico

ECOSYSTEM
Original Query Homo sapiens,faeces,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 730 days

DISEASE
Original Query ETEC infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore