Plasmid NZ_CP017801.1

Sequence

Nucleotide Information

Accession NZ_CP017801.1
Description Enterococcus faecium strain E243 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 10382 bp
GC Content 0.31 %
Created at NCBI Nov. 9, 2017



Assembly

Genome Data Information

Accession GCF_002761275.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 5933400

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,NY
Original Query Type name
Coordinates (Lat/Lon) 43.16/-75.84
Address USA,NY

ECOSYSTEM
Original Query Homo sapiens,Peritoneal fluid
Classification host_associated,peritoneum
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query UTERUS CANCER
DOID/SYMP
  • Uterine cancer (DOID:363 )
    • A female reproductive organ cancer that is located_in the uterus.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore