Plasmid NZ_CP017779.1

Sequence

Nucleotide Information

Accession NZ_CP017779.1
Description Klebsiella pneumoniae strain KP36M plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 173923 bp
GC Content 0.53 %
Created at NCBI Feb. 12, 2021



Assembly

Genome Data Information

Accession GCF_016864395.1
Assembly Coverage 250


Biosample

Curated Collection Information
Accession 5928542

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.002234N;120.21955700E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.00/120.22
Address National Cheng Kung University Hospital, 138, Shengli Road, Ren'ai Village, North District, Sanfenzi, Tainan, 704, Taiwan

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query acute pyelonephritis
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP017779.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplustet(D)copy
amrfinderplusaac(3)-IIdcopy
amrfinderplusaadA1copy
amrfinderplusblaTEM-1copy
rgiqacEcopy
rgiaadAcopy
amrfinderplusqnrS1copy
PGAGrestriction endonuclease subunit Scopy
PGAGclass I SAM-dependent DNA methyltransferasecopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 190 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021231_00058MOBF2386129119minus98.0610003357
relaxaseCP035180_00077MOBF2913129886minus91.667980369
mate-pair-formationNC_021502_00150MPF_T2912231431minus97.40310001428
mate-pair-formationNC_019155_00032MPF_F3390136744minus96.4149901758
mate-pair-formationNC_019165_00034MPF_F3674738102minus96.239990806
mate-pair-formationNC_021654_00016MPF_F4099642957minus98.7779801243
mate-pair-formationNC_019389_00080MPF_F4301043645minus97.171005.32e-136427
mate-pair-formationNC_022609_00081MPF_F4366144647minus92.1211000615
mate-pair-formationNC_014312_00128MPF_F4508645715minus99.524996.38e-126398
mate-pair-formationNC_021502_00131MPF_T4610748743minus97.04210001762
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 20 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2