Plasmid NZ_CP017647.1

Sequence

Nucleotide Information

Accession NZ_CP017647.1
Description Acinetobacter baumannii strain KAB03 plasmid unnamed, complete sequence
Source refseq
Topology circular
Length 73891 bp
GC Content 0.34 %
Created at NCBI Oct. 26, 2016



Assembly

Genome Data Information

Accession GCF_001806385.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 5601668

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea,Daejeon
Original Query Type name
Coordinates (Lat/Lon) 36.35/127.38
Address South Korea,Daejeon

ECOSYSTEM
Original Query Homo sapiens,cell culture,sputum
Classification cell_culture,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP061671.1 See Comparison
AP025536.1 See Comparison
CP099791.1 See Comparison
NZ_CP077841.1 See Comparison
NZ_CP096719.1 See Comparison
NZ_CP027243.1 See Comparison
NZ_CP137063.1 See Comparison
NZ_CP137062.1 See Comparison
NZ_CP137060.1 See Comparison
NZ_AP025532.1 See Comparison
NZ_CP131891.1 See Comparison
NZ_CP131887.1 See Comparison
NZ_CP061671.1 See Comparison
NZ_CP077841.1 See Comparison
CP099791.1 See Comparison
AP025536.1 See Comparison
NZ_CP027243.1 See Comparison
NZ_CP096719.1 See Comparison
NZ_CP137060.1 See Comparison
NZ_CP137063.1 See Comparison
NZ_CP137062.1 See Comparison
NZ_CP096719.1 See Comparison
NZ_CP131891.1 See Comparison
NZ_CP131887.1 See Comparison
NZ_CP077841.1 See Comparison
NZ_AP025532.1 See Comparison
NZ_CP061671.1 See Comparison
AP025536.1 See Comparison
CP099791.1 See Comparison
CP099791.1 See Comparison
NZ_CP027243.1 See Comparison
NZ_CP137060.1 See Comparison
NZ_CP061671.1 See Comparison
NZ_CP137063.1 See Comparison
NZ_CP137062.1 See Comparison
NZ_AP025532.1 See Comparison
NZ_CP131891.1 See Comparison
NZ_CP131887.1 See Comparison
AP025536.1 See Comparison
NZ_CP096719.1 See Comparison
NZ_CP077841.1 See Comparison
NZ_CP027243.1 See Comparison
NZ_CP017647.1 See Comparison
NZ_AP025532.1 See Comparison
NZ_CP137060.1 See Comparison
NZ_CP137063.1 See Comparison
NZ_CP137062.1 See Comparison
CP099791.1 See Comparison
NZ_CP131891.1 See Comparison
NZ_CP131887.1 See Comparison
NZ_CP061671.1 See Comparison
AP025536.1 See Comparison
NZ_CP077841.1 See Comparison
NZ_CP096719.1 See Comparison
NZ_CP137063.1 See Comparison
NZ_CP027243.1 See Comparison
NZ_CP137062.1 See Comparison
AP025536.1 See Comparison
NZ_CP137060.1 See Comparison
NZ_CP131891.1 See Comparison
NZ_CP131887.1 See Comparison
NZ_AP025532.1 See Comparison
NZ_CP061671.1 See Comparison
NZ_AP025532.1 See Comparison
NZ_CP077841.1 See Comparison
NZ_CP096719.1 See Comparison
NZ_CP027243.1 See Comparison
NZ_CP137060.1 See Comparison
CP099791.1 See Comparison
NZ_CP137063.1 See Comparison
NZ_CP137062.1 See Comparison
AP025536.1 See Comparison
NZ_CP131891.1 See Comparison
NZ_CP131887.1 See Comparison
NZ_CP061671.1 See Comparison
CP099791.1 See Comparison
NZ_CP077841.1 See Comparison
NZ_CP137060.1 See Comparison
NZ_CP027243.1 See Comparison
NZ_CP096719.1 See Comparison
NZ_CP137063.1 See Comparison
NZ_CP137062.1 See Comparison
NZ_CP131891.1 See Comparison
NZ_CP131887.1 See Comparison
NZ_AP025532.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2