Plasmid NZ_CP016508.1

Sequence

Nucleotide Information

Accession NZ_CP016508.1
Description Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-003 plasmid pSH12-003_2, complete sequence
Source refseq
Topology circular
Length 2096 bp
GC Content 0.56 %
Created at NCBI July 22, 2016



Assembly

Genome Data Information

Accession GCF_001690005.1
Assembly Coverage 75


Biosample

Curated Collection Information
Accession 4334629

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada,Quebec
Original Query Type name
Coordinates (Lat/Lon) 52.48/-71.83
Address Canada,Quebec

ECOSYSTEM
Original Query Homo sapiens,human
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP016505.1
    • Description: Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-007 plasmid pSH12-007_2, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2016

  • Host Taxonomy
    Assigned Host: Salmonella enterica (611)
  • Biosample
    Accession: 4334633
  • GEOGRAPHICAL INFORMATION
    • Original Query: Canada,Quebec
    • Original Query Type: name
    • Address: Canada,Quebec
    • Coordinates (Lat/Lon): 52.48/-71.83
  • ECOSYSTEM
    • Original Query: Homo sapiens,human
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Salmonella gastroenteritis
    • DOID/SYMP:
      • Salmonellosis (DOID:0060859 )
        • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

    • Visualization

    PNG JSON


  • Sequence
    • Accession: NZ_CP012925.1
    • Description: Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_2, complete sequence
    • Source: refseq
    • Created at NCBI: Jan. 27, 2016

  • Host Taxonomy
    Assigned Host: Salmonella enterica (611)
  • Biosample
    Accession: 4156727
  • GEOGRAPHICAL INFORMATION
    • Original Query: Canada,Quebec
    • Original Query Type: name
    • Address: Canada,Quebec
    • Coordinates (Lat/Lon): 52.48/-71.83
  • ECOSYSTEM
    • Original Query: Homo sapiens,human stool
    • Classification: fecal,gastrointestinal_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Salmonella gastroenteretis
    • DOID/SYMP:
      • Salmonellosis (DOID:0060859 )
        • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore