Plasmid NZ_CP011977.1

Sequence

Nucleotide Information

Accession NZ_CP011977.1
Description Klebsiella pneumoniae DMC1097 plasmid pDMC1097-218.836kb, complete sequence
Source refseq
Topology circular
Length 218836 bp
GC Content 0.53 %
Created at NCBI Aug. 13, 2015



Assembly

Genome Data Information

Accession GCF_000417225.2
Assembly Coverage 10.02


Biosample

Curated Collection Information
Accession 2141981

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP011977.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgimphAcopy
amrfinderpluspcoScopy
rgiaadA2copy
rgiANT(3'')-II-AAC(6')-IId bifunctional proteincopy
rgiTEM-10copy
rgiMrxcopy
amrfinderpluspcoRcopy
amrfinderplusqacEdelta1copy
amrfinderpluspcoDcopy
amrfinderplussul1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 246 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_014312_00116MPF_F180919181221plus97.031004.49e-60204
mate-pair-formationNC_014312_00118MPF_F181797182534plus99.1871004.63e-159494
mate-pair-formationNC_023332_00154MPF_F182537183958plus99.5781000789
mate-pair-formationNC_021654_00004MPF_F184573185139plus1001002.63e-122386
mate-pair-formationNC_021502_00131MPF_T187776190412plus96.24610001758
mate-pair-formationNC_014312_00128MPF_F190804191421plus98.544985.21e-121384
mate-pair-formationNC_022609_00081MPF_F191441192430plus95.7581000666
mate-pair-formationNC_019389_00080MPF_F192446193081plus96.6981003.2499999999999997e-135424
mate-pair-formationNC_021654_00016MPF_F193081195084plus10010001292
mate-pair-formationNC_019165_00034MPF_F197884199251plus99.7811000842
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 19 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2