Plasmid NZ_CP011656.1

Sequence

Nucleotide Information

Accession NZ_CP011656.1
Description Citrobacter freundii strain CAV1741 plasmid pKPC_CAV1741, complete sequence
Source refseq
Topology circular
Length 129196 bp
GC Content 0.52 %
Created at NCBI June 18, 2015



Assembly

Genome Data Information

Accession GCF_001022275.1
Assembly Coverage 47


Biosample

Curated Collection Information
Accession 3733754

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 38.14N;78.45W
Original Query Type coordinates
Coordinates (Lat/Lon) 38.14/-78.45
Address Aviation Drive, Deerwood, Albemarle County, Virginia, 22936, United States

ECOSYSTEM
Original Query Homo sapiens,respiratory
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP011656.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiAAC(6')-Ib9copy
amrfinderplussul1copy
amrfinderplusqacEdelta1copy
amrfinderplusblaKPC-2copy
amrfinderplusblaKPC-2copy
amrfinderplusaac(6')-Ib4copy
amrfinderplusaadA1copy
amrfinderplusdfrA3bcopy
amrfinderplusblaSHV-30copy
amrfinderplusblaTEM-1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 160 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000687__KX348146_00033rep_cluster_13671894plus98.09810001557
repliconU27345IncL/M4465245390plus99.45910001343
relaxaseCP008826_00025MOBC1453815248plus99.5781008.48e-158491
relaxaseNC_004464_00056MOBP9298994965plus99.39310001373
mate-pair-formationNC_004464_00105MPF_I6246564549minus99.42410001407
mate-pair-formationNC_005246_00057MPF_I9552196255plus99.592952.02e-162505
mate-pair-formationNC_019063_00094MPF_I100978101487plus99.4121001.74e-108346
mate-pair-formationNC_019344_00078MPF_I102153102863plus98.7341005.1400000000000006e-129408
mate-pair-formationNC_004464_00066MPF_I102875104023plus99.4781000646
mate-pair-formationNC_004464_00068MPF_I105399106100plus94.4441001.3999999999999998e-127404
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2