Plasmid NZ_CP011290.1

Sequence

Nucleotide Information

Accession NZ_CP011290.1
Description Salmonella enterica subsp. diarizonae strain 11-01853 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 32098 bp
GC Content 0.41 %
Created at NCBI April 25, 2016



Assembly

Genome Data Information

Accession GCF_001629755.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 3371464

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 49.60N;11.01E
Original Query Type coordinates
Coordinates (Lat/Lon) 49.60/11.01
Address Universitätsklinikum Erlangen, Döderleinstraße, Burgberg, Erlangen, Bavaria, 91054, Germany

ECOSYSTEM
Original Query Homo sapiens,stool,human sample
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 77 years
Host-associated Sex male

DISEASE
Original Query Salmonella gastroenteritis,death,advanced rectal cancer
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.
  • Rectum cancer (DOID:1993 )
    • A colorectal cancer that is located_in the rectum.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP029728.1 See Comparison
NZ_CP134383.1 See Comparison
NZ_OQ401026.1 See Comparison
NZ_CP026942.1 See Comparison
NZ_CP048333.1 See Comparison
NZ_CP134383.1 See Comparison
CP063721.1 See Comparison
NZ_OX030705.1 See Comparison
NZ_CP011293.1 See Comparison
NZ_CP029728.1 See Comparison
NZ_CP080307.1 See Comparison
NZ_CP080313.1 See Comparison
NZ_CP021735.1 See Comparison
NZ_OQ401026.1 See Comparison
NZ_CP026942.1 See Comparison
NZ_CP048333.1 See Comparison
NZ_OX030705.1 See Comparison
CP063721.1 See Comparison
NZ_CP134383.1 See Comparison
NZ_CP080307.1 See Comparison
NZ_CP080313.1 See Comparison
NZ_CP021735.1 See Comparison
NZ_CP011293.1 See Comparison
NZ_CP029728.1 See Comparison
NZ_CP080307.1 See Comparison
NZ_CP048333.1 See Comparison
CP063721.1 See Comparison
NZ_OQ401026.1 See Comparison
NZ_CP026942.1 See Comparison
NZ_OX030705.1 See Comparison
NZ_CP080313.1 See Comparison
NZ_CP011293.1 See Comparison
NZ_CP021735.1 See Comparison
NZ_OQ401026.1 See Comparison
NZ_CP029728.1 See Comparison
NZ_CP134383.1 See Comparison
NZ_CP048333.1 See Comparison
NZ_CP026942.1 See Comparison
NZ_OX030705.1 See Comparison
CP063721.1 See Comparison
NZ_CP048333.1 See Comparison
NZ_CP080307.1 See Comparison
NZ_CP080313.1 See Comparison
NZ_CP021735.1 See Comparison
NZ_CP029728.1 See Comparison
NZ_CP134383.1 See Comparison
NZ_OQ401026.1 See Comparison
NZ_CP011293.1 See Comparison
NZ_CP026942.1 See Comparison
NZ_OX030705.1 See Comparison
CP063721.1 See Comparison
NZ_CP029728.1 See Comparison
NZ_CP011293.1 See Comparison
NZ_CP080307.1 See Comparison
NZ_CP080313.1 See Comparison
NZ_CP021735.1 See Comparison
NZ_CP048333.1 See Comparison
NZ_CP134383.1 See Comparison
NZ_OQ401026.1 See Comparison
NZ_CP026942.1 See Comparison
NZ_OX030705.1 See Comparison
CP063721.1 See Comparison
NZ_CP080307.1 See Comparison
NZ_CP080313.1 See Comparison
NZ_CP021735.1 See Comparison
NZ_CP011290.1 See Comparison
NZ_CP011293.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore