Plasmid NZ_CP011048.1

Sequence

Nucleotide Information

Accession NZ_CP011048.1
Description Cronobacter sakazakii strain ATCC 29544 plasmid CSK29544_1p, complete sequence
Source refseq
Topology circular
Length 93905 bp
GC Content 0.57 %
Created at NCBI May 6, 2015



Assembly

Genome Data Information

Accession GCF_000982825.1
Assembly Coverage 73


Biosample

Curated Collection Information
Accession 3371468

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36.17N;86.77W
Original Query Type coordinates
Coordinates (Lat/Lon) 36.17/-86.77
Address 239, Woodland Street, East Nashville, Nashville-Davidson, Davidson County, Middle Tennessee, Tennessee, 37213, United States

ECOSYSTEM
Original Query infants,primary hospital lab
Classification anthropogenic,hospital,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query neonatal necrotizing enterocolitis
DOID/SYMP
  • Perinatal necrotizing enterocolitis (DOID:8677 )
    • None

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP011048.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore