Plasmid NZ_CP008709.1

Sequence

Nucleotide Information

Accession NZ_CP008709.1
Description Acinetobacter baumannii strain AB5075-UW plasmid p3AB5075, complete sequence
Source refseq
Topology circular
Length 1967 bp
GC Content 0.39 %
Created at NCBI April 1, 2015



Assembly

Genome Data Information

Accession GCF_000963815.1
Assembly Coverage 70


Biosample

Curated Collection Information
Accession 2894434

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 38.976556N;77.02875W
Original Query Type coordinates
Coordinates (Lat/Lon) 38.98/-77.03
Address Ward 4, Washington, District of Columbia, 20012, United States

ECOSYSTEM
Original Query Homo sapiens,tibia/osteomyelitis of diabetes patient
Classification disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Acinetobacter baumannii osteomyelitis
DOID/SYMP
  • Osteomyelitis (DOID:1019 )
    • A bone inflammation disease that has_material_basis_in infection located_in bone or located_in bone marrow.
    • Has_material_basis_in: ['infection located_in bone or located_in bone marrow']
  • Acinetobacter infectious disease (DOID:3091 )
    • An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
    • Has_material_basis_in: ['acinetobacter']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2